Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01309 ATGATTCAAAATTCTGGTTCAGAGGAGGATGCACATGCTCTGATGGATGAGAGGAAGAGGAAGAGAATGATATCAAACTTTGAATCAGCAAGGCGGTCTCGAATAAGAAAAAAGAAATATATGAATGATCTGCTTAGTTTAATGGATAATCTCAAGCATGAGAATCAGCAGATTTTCGAATCGATCCAATCCACTACCCAAAATTACTTGAATATTGAAGCTGAGAACTCAGTCCTGAAAGCTCAAATCAGTGACTTGAGTTTTAGGATTTCGGACATAAGAATGTTTGAAGTGTTTTTGAGTTTCAGAGGGGAAGACACACGTGCTTCTTTTGTTTCACATCTCTATGCCAATCTTCAAAATGCTGGAATTGTTGTGTTCAAGGATGATGAGTCACTTCGAAGGGGAGATCACATAGATTCTCTGTTGGAAGCAATTCGACAGTCTCAAATTTCTGTTGTTGTTTTCTCAAGAAATTATGCAGAGTCACAATGGTGTCTAAAAGAGTTGGAGAAAATAATTGAGTGTCACAGAACCATAGGGCAGATGGTAGTACCAGTGTTTTATGACGTTGATCCTTCTGAAGTACGTCATCAAACAGGCGAGTTTGGAAAATCATTTCAAAGCCTTTTGAACAGAGTTTCAATAGAGGAAGGTGAGAAGGAGCTTAGGGAGCGTGGTAAGGTGCAGTGTTGGAGGGAGGCACTTCGTGAAGCTGCTAGCATCTCAGGAATTGTAGTCCTAAATTCCAGGAATGAGAGTGAGGCTATCAAAAGCGTTGTTGAAAATGTTATACGTTTGTTAGACAAGACAGAGTTGTTCGTTGTTGATAATCCAGTGGGAGTAGAATCTCGAGTGCTAGACACGATTCAGCTGCTAGATCTCGAAAAATCAAATGATGTTCTACTGCTAGGAATGTGGGGAATGGGAGGCATTGTCGTGCATGCTTGCTTCTTTATTGGAATGGACCGAAATGATGTCATACATATATTAAATGGTTCTGGACTTTGTGCAGAAAATGGAATACGTGTCCTAGTCGAGCGAAGCCTTGTAACTGTAGATCATAAAAACAAGCTTGGAATGCATGATTTGTTACGAGACATGGGAAGAGAAATCATTCGTGGAAAATCACCGAAGGAGCCTGAAGAACGTAGCAGATTATGGTTTCATGAGGATGTGCTTGATGTACTATCACAACAATCTGGAACAAAAGCTATCGAGGGATTGGCTTTGAATTTACCAAGAACTGATGGACAATGTTTGAATACTAAAGCTTTTAAGAATATGAAAAAGCTCAGGTTACTACAACTTGCTGGTGTAGATCTTATTGGAGATTATAAATATCTTTCCAAAAATCTGAGATGGCTTTGTTGGCATGAATTTCCTTTAACAGCCCTTCCTGCAAACTTCTATCAAGGAAGCCTAGTTTCCCTTGAGTTAGAAAACAGTTATGTTAAACGTGTTTGCAAAAAAGCCCAGGTGATGGAGAACCTGAAAATTCTGAATCTAAGTCATTCTCATTATTTAACACATACTCCAGACTTTTCAAATTTGCCTAATCTTGAAAAGCTGGTACTCATAGATTGTCCAAGTCTGTCCGAGGTTTCATATACCATTGGACATCTCACCAAAGTTCTACTGATAAACTTTCAAGATTGTGTTAGCCTTTGTAACCTTCCACGAAGTATCTATAAGTTGAAATCTCTTAAAACACTCATTCTTTCTGGTTGTTTAAAGATTGATAAGTTGGAAGAGGACTTGGAACAGATGGAGTCTTTGACAACCCTTGTTGCTGATAAGACTGCAGTAACAACAATTCCCTTCTCCATTGTAAGATCAAAAAGCATTGGATATGTTTCTCTGTGTGGCTATGAAGGGTTCTTACGGGATATGGTTCCCTCTATCATTTGGTCTTGGATGTCGCCAACCAATAATAGTCTTTCATCCCTTGTTCAAAAATTTGGGGGCCTTTCGTCTCTTGTTTCTTTAGATGTGCCAAATAGCAGTTCCCACCATCTAGCATCTCTTTCCAAGGACCTTCCAAAACTTGAAAGTCTTTGGGTAGAGTGTGGTTCAGAACTTCAATTATCTCAACATACCAAAATTATTTTAGATGCTTTATATGTAACAAATTTAAGGGAATCAGAATCACCTGCAACCACATCACAAATGCCAAATATCAACGCTTTGGCATTAATTGAATGCAGCAGTCAAGTTCATGTATCAGGATCAAATCTGTTAATTCAAATGGGAATGAGTTCTGAGGTCTCCTCCAATCTAAAAGAAAGTATTTTACAGAATAATCAAGATTGTTTGCTCCCCCATGATTGTTATCCAGATTGGTTAGCCTTTAACAGCAAAGGCTCTTCTGTGAGTTTTGAAATCCCTCAAGTGAATGGATATAACTTGAAGACAATAATGTGTCATGTCCATTATTCTTCTCCTGACAGTATAACATCAGATGGCCTTAAAAACTTGTTGGTGATAAATCACACAAAGGCCACTATTCAGCTTTATAAAAGAAATGCATTAGCCTTGCTTGAAGATGAGGACTGGCAGAGGGTAGTATCAAATATAGAGCCTGGTAACAAAGTGGAGGTTGTTGTTGTTTTTGGAAACAGATTAACTGTGAACAAGACCACAATTTATCTCATTTATAAGCCAATGGGTGAAAAAAGTGGAGCACTGTCTTGCACCAAGCAATAA 2706 0.3847 MIQNSGSEEDAHALMDERKRKRMISNFESARRSRIRKKKYMNDLLSLMDNLKHENQQIFESIQSTTQNYLNIEAENSVLKAQISDLSFRISDIRMFEVFLSFRGEDTRASFVSHLYANLQNAGIVVFKDDESLRRGDHIDSLLEAIRQSQISVVVFSRNYAESQWCLKELEKIIECHRTIGQMVVPVFYDVDPSEVRHQTGEFGKSFQSLLNRVSIEEGEKELRERGKVQCWREALREAASISGIVVLNSRNESEAIKSVVENVIRLLDKTELFVVDNPVGVESRVLDTIQLLDLEKSNDVLLLGMWGMGGIVVHACFFIGMDRNDVIHILNGSGLCAENGIRVLVERSLVTVDHKNKLGMHDLLRDMGREIIRGKSPKEPEERSRLWFHEDVLDVLSQQSGTKAIEGLALNLPRTDGQCLNTKAFKNMKKLRLLQLAGVDLIGDYKYLSKNLRWLCWHEFPLTALPANFYQGSLVSLELENSYVKRVCKKAQVMENLKILNLSHSHYLTHTPDFSNLPNLEKLVLIDCPSLSEVSYTIGHLTKVLLINFQDCVSLCNLPRSIYKLKSLKTLILSGCLKIDKLEEDLEQMESLTTLVADKTAVTTIPFSIVRSKSIGYVSLCGYEGFLRDMVPSIIWSWMSPTNNSLSSLVQKFGGLSSLVSLDVPNSSSHHLASLSKDLPKLESLWVECGSELQLSQHTKIILDALYVTNLRESESPATTSQMPNINALALIECSSQVHVSGSNLLIQMGMSSEVSSNLKESILQNNQDCLLPHDCYPDWLAFNSKGSSVSFEIPQVNGYNLKTIMCHVHYSSPDSITSDGLKNLLVINHTKATIQLYKRNALALLEDEDWQRVVSNIEPGNKVEVVVVFGNRLTVNKTTIYLIYKPMGEKSGALSCTKQ 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01309 901 SUPERFAMILY Leucine zipper domain 18 72 IPR046347 GO:0003700|GO:0006355
Spst4g01309 901 Pfam bZIP transcription factor 18 73 IPR004827 GO:0003700|GO:0006355
Spst4g01309 901 SUPERFAMILY "Winged helix" DNA-binding domain 312 397 IPR036390 -
Spst4g01309 901 Gene3D - 91 276 IPR035897 -
Spst4g01309 901 SUPERFAMILY Toll/Interleukin receptor TIR domain 94 244 IPR035897 -
Spst4g01309 901 SUPERFAMILY L domain-like 361 695 - -
Spst4g01309 901 ProSiteProfiles TIR domain profile. 94 268 IPR000157 GO:0007165
Spst4g01309 901 Pfam TIR domain 96 265 IPR000157 GO:0007165
Spst4g01309 901 FunFam Disease resistance protein (TIR-NBS-LRR class) 93 270 - -
Spst4g01309 901 Coils Coil 48 68 - -
Spst4g01309 901 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 16 79 IPR004827 GO:0003700|GO:0006355
Spst4g01309 901 SMART till_3 95 242 IPR000157 GO:0007165
Spst4g01309 901 CDD bZIP_plant_GBF1 19 69 IPR045314 GO:0003700|GO:0006355
Spst4g01309 901 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 316 607 IPR044974 GO:0006952
Spst4g01309 901 FunFam BZIP transcription factor 16 67 - -
Spst4g01309 901 Gene3D Ribonuclease Inhibitor 421 772 IPR032675 -
Spst4g01309 901 SMART brlzneu 14 78 IPR004827 GO:0003700|GO:0006355
Spst4g01309 901 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 21 36 IPR004827 GO:0003700|GO:0006355
Spst4g01309 901 Gene3D - 16 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01309 Spst-Chr4 49943317 49947924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01309 316 610 WRKY Transcription Factor Family AT4G12020 35.691 1.99e-38 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst4g01309 TIR 1.1e-41 CL0173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01309 - - gmx:100800776 889.026