LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g01304	ATGAACAGGGGAATTGAGGTTCTTTCTCCAGCCTCTTACCTCCATAGTTCCAATTGGTTGTTCCAAGAAAGCTTGGGGACCAAGTGGACTCCACAGGAAAACAAGTTGTTTGAGAGTGCTCTGGCTGTGTTTGACAAGGACACTCCAGACCGTTGGCTGAAGGTGGCAGCCTTGATTCCAGGTAAAACTGTTGATGATGTGATCAAACAGTATAGGGAACTGGAAGAAGATGTGAGTGTCATTGAATCTGGGTTTTTCCCAGTTCCAATGTACACTGCTGACTCCTTCACATTGGAGTGGGTCAACAATCAAGGATTTGATGGTTTCAAGCAATTCTATGGTGTTACTGGCAAAAGGAGTACTTCCACTAGACCACCTGAACAGGAGAGGAAAAAAGGAGTGCCATGGACTAAAGAGGAGCACAGGCAATTTCTGATGGGTCTGAAGAAGTATGGTAAAGGAGACTGGAGAAACATCTCCCGCAATTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGCCATGCTCAGAAGTATTTCATCAGGCAGCTAATTGAGGGAAAGGATAAGAAGAGATCAAGTATCCATGACATCACGATGGTGAATCTCCCCGAAACAAATTCTCCTTCACCAGAAGATCACTCAGTGAAGGATGTGAATCCAACCCAGAATCAGAAACTGTGTAGCATAGTCAAACAGGAATATGAATGGAAATTGCCATGTGAGAGTGTGCCTGTGTTTTCCAATTCAGCAAACGGAAATATGTTAATGACGCCACTATGTGGAGTTTCCTCATATGGGTCTAAACCGCTTCAGGAGCAGTATTTGTTCACTGGTTCTCTCCAAGGATGCCAATTTGGACCCTTTGACACTAATATGAAAATGCAGTCCATGCATAATCAATGA	906	0.4404	MNRGIEVLSPASYLHSSNWLFQESLGTKWTPQENKLFESALAVFDKDTPDRWLKVAALIPGKTVDDVIKQYRELEEDVSVIESGFFPVPMYTADSFTLEWVNNQGFDGFKQFYGVTGKRSTSTRPPEQERKKGVPWTKEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLIEGKDKKRSSIHDITMVNLPETNSPSPEDHSVKDVNPTQNQKLCSIVKQEYEWKLPCESVPVFSNSANGNMLMTPLCGVSSYGSKPLQEQYLFTGSLQGCQFGPFDTNMKMQSMHNQ	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g01304	301	SUPERFAMILY	Homeodomain-like	129	183	IPR009057	-
	Spst4g01304	301	ProSiteProfiles	Myb-like domain profile.	128	180	IPR001005	-
	Spst4g01304	301	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	23	234	IPR043363	-
	Spst4g01304	301	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	128	184	IPR017930	-
	Spst4g01304	301	Pfam	Myb-like DNA-binding domain	135	180	IPR001005	-
	Spst4g01304	301	MobiDBLite	consensus disorder prediction	117	136	-	-
	Spst4g01304	301	SMART	sant	132	182	IPR001005	-
	Spst4g01304	301	SMART	sant	25	77	IPR001005	-
	Spst4g01304	301	CDD	SANT	135	180	IPR001005	-
	Spst4g01304	301	Gene3D	-	22	88	-	-
	Spst4g01304	301	ProSiteProfiles	SANT domain profile.	24	79	IPR017884	-
	Spst4g01304	301	FunFam	Transcription factor SRM1	21	88	-	-
	Spst4g01304	301	CDD	SANT	28	74	IPR001005	-
	Spst4g01304	301	FunFam	transcription factor MYB1R1	134	185	-	-
	Spst4g01304	301	ProSiteProfiles	SANT domain profile.	136	184	IPR017884	-
	Spst4g01304	301	Gene3D	-	134	184	-	-
	Spst4g01304	301	SUPERFAMILY	Homeodomain-like	27	83	IPR009057	-
	Spst4g01304	301	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	131	183	IPR006447	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst4g01304	Spst-Chr4	49862212	49863573	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Spst4g01304		Myb_DNA-binding	4.3e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g01304	-		-	gmx:778077	517.309