Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01292 ATGGATGACAAAGGATGCCCTGAAGAAAGTGAAGAACAGAGCAAGCAAAAGGGGAAGGCGGAGACGGTGGCGTTTCACAAGCTGTTTGCTTTTGCCGACGGCGCAGACATTGTGTTGATGGTGGTTGGAAGCTTTGGTGGCATTGGAAATGGTTTGGGGTTTCCTCTTATGACATTACTGTTTGGTGAAATAATTGACACCTTTGGTGGTAACCAGAACAGCCCCAACATAGTTGAAAAAGTGTCCCAGGTGACTTGCTGGATGGTGACAGGGGAGAGACAGGCGGCGAGGATTAGGGGATTGTATTTGAAAAGTATCCTAAGACAAGACATTGTTTTCTTTGACAAGGAGACAAACACTGGGGAAGTGATAGGGAGAATATCAGGTGATACTGTTCTCATTCAAGACGCCATGGGAGAGAAGGTTGGGAAGTTTGTGCAGCTGATAGCAACGTTCATAGGGGGCTTTGCGATAGCATTTGCGAAAGGGTGGCTTCTTACAGTTGTGATGCTGTGCATGCTTCCACTCCTTGTTTTGTCAGGAGCTGCCATGGCCATCATCCAGGGAAGGATGGCTTCCAGAGGTCAAGCTGCCTATGCAAAAGCTGCACACGTACTTCACCAGACAATTGCATCCATAAGAACAGTTGCATCATTTACAGGGGAAAAACAGGCAGTGTCTAACTACAGCAAATTTCTTGTAGAAGCTTACGTAACAGGAGTTCATGAAGGTTCTGTTGCTGGGGTGGCCCTTGGCACAGTTATGCTTCTTGTTTTTAGTGGTTATGCTTTGGCAGTGTGGTTTGGCGCAAAGATGATAATGGAAAATGAAGAGAAATATAATGGGGGCACGGTGCTTAATGTGATTGCTTCTTTTTTAACTGCTTCAATGTCTCTTGGGGAGGCATCCCCTATCATGAGTGCTTTTGCTGCGGGTCAAGCTGCAGCTTACAAAATGTTTGAAACAATTGAGAGGAAGCCAGTGATAGATGCTTATGATCCAAATGGGAAAATATTGGAAGATATTGAAGGTGAAATAGAGTTGAGGGATGTTTGTTTCAGTTATCCAACGAGGCCTGAGGAGTTGATATTCAATGGTTTCTCTCTTGATATACCTAGTGGTACAATTGCTGCACTAGTGGGACAAAGTGGGAGTGGAAAATCTACGGTTATCAGTTTGATAGAGAGATTCTATGATCCTCAGGCAGGTGAAGTTCTTATTGATGGCATTAATCTGAAAGAGTTTCAGCTTAGGTGGATGAGGGGGAAAATTGGCCTTGTTAACCAGGAGCCAGTGTGGTTTGCATCAAGCATTAAAGATAACATTGCATATGGAAAGGAGGGAGCCACAATTGAAGAGATAAGATCAGCATGTGGACTTGCAAATGCTACTAAATTCATTGACAAACTGCCACAGGGATTGAACACAATGGTTGGTGAACAAGGAACTCAACTCTCTGGTGGACAGAAACAGCGCATTGCTATAGCAAGAGCAATCTTAAAGGATCCAAGAATTCTACTTCTGGACGAAGCTACTAGTGCCCTTGATGCAGAGTCTGAAAGGACAGTGCAAGAGGCTCTAGACAGGGTAATGGTTAACCGAACTACTGTTGTTGTGGCGCATCGGTTGAGCACAGTAAGGAATGCTGATATGATTGTTGTAATTCATAGAGGGAAGGTGGTTGAAAAAGGAACACACTCGGAACTACTCAAGGATCTCGAGGGAGCTTACTCTCAATTGATACGTTTACAAGAAGTAAACAAGGAATCAGAAGAAACTACAAGCTATCACAGCAAGAGTGAACTTTCTACAGAACCCTCTACACAGTTAACTAAAAAGAGATCACTTAGGAGATCCATTAGCAGGGGATCATCATTGGGGGGTAGTAGCAGCCACTCATTTTCTCTTTCCAATGGTTTACCCACAGGAGTTAGTGTCCCTGCTACTGAAGATGAAGACTTATTACTTGAAAATCAAGCACAAGAGGTTTCACTTCACCGACTTGCTTCCCTCAACAAGCCAGAGTTTCCAGTTCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTGTTATACTTCCCATATTTGGGGTGTTGATATCCAGTGCGGTTAAAACATTTTATGAACCAGTTAATGAAATGAAAAAGGACTCCAAATTTTGGGCACTAATGTTTGTGGTCCTTGGTCTTGCATCATTGTTGGTAATTCCAGCTCGAGCATACTTTTTTTCTGTGGCTGGATGCAAGTTAATCCAACGTATCAGGGTAATATGTTTTGAGAAAGTGGTGAGCATGGAGGTTGGTTGGTTTGATGAGCCTAGCAACTCAAGTGGTGCCATTAGTGCAAGGCTCTCAGAAATTGCTGCTTCTGTGCGCGCCCTTGTTGGTGATGCACTGGGGCTGTTGGTCCAAAATATAACGTGTGCCTTGGCAGGGGTTCAGCAAAGATGCGAAATGATGTACGAGGAAGCAAGCCAAGTTGCTAAGGATGCAGTTGGAAATATAAGAACAGTAGCTTCTTTCTGTGCTGAAGACAAGGTTATGGACTTGTATAGGATGAAATGTGAGGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGTGGATTAGGATTTGGGGTTTCATTTTTCTTACTGTTTTGTGTCTATGCAACTAGTTTCTATGCAGGAGCTAGACTAGTGGCCTCTGGAGAAGCATCATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACCATGGCAGCTATTGGAGTTTCCCAGTTTAGCACAATTTCTCCAGATTCTGGCAAAGCCAAGTCAGCTACTGCTGCCATATTTAGCATAATTGATAAGAAGTCAGAGATAGATCCAAGGAATGAGTCTGGTACCACATTGGATAGAGTTGAGGGAGAAATTGAGTTTCGTCATGTGAATTTCAAGTACCCATCAAGGCCTAAGATACAGATATTTCGAGACCTTAACTTGGTTATCCATTCTGGCAAGACAGTAGCCCTTGTTGGTGAAAGTGGAAGTGGAAAATCCACAGTGATTGCGTTGTTGCAGAGATTTTATGATCCCAATTCAGGTCAAATCACACTTGATGGTGTACCAATTGGGGAGCTACAACTCAAGTGGTTTAGACAGCAAATGGGTCTTGTAAGCCAAGAGCCAGTATTGTTCAATGACACTATTCGTGGCAACATTGCTTATGGGAAGGGAGGTGATGCAACTGAAGCAGAAATCATAGCAGCAGCAGAACTAGCTAATGCCCATGTGTTTATCAGTGGATTACAACAGATTGTACTTGGGTTAACACTTTCTCACATTTCACATGGCTATGACACTGCAGTGGGAGAAAGGGGAACCCAATTATCTGGTGGGCAGAAGCAAAGAGTAGCCATTGCCCGTGCTATGATTAAAAGTCCAAAAATATTGCTATTGGACGAAGCCACAAGTGCATTAGATGCTGAATCAGAGAGAGTTGTTCAAGAAGCATTGGACAACGTCATGGTGAATATGACCACTGTGGTGGTGGCACATCGCCTATCTGCAATAAAAAATGCAGATTTGATTGCTGTTGTGAAAGATGGAGGCATTGTAGAGAAGGGAAGCCATGAAACACTCGTTCGAGTCAAGGATGGGTTTTATGCTTCCTTAATCCAACTTCACTCAAATGCTTCAAAAATTTTGGTTCCTTAA 3681 0.4338 MDDKGCPEESEEQSKQKGKAETVAFHKLFAFADGADIVLMVVGSFGGIGNGLGFPLMTLLFGEIIDTFGGNQNSPNIVEKVSQVTCWMVTGERQAARIRGLYLKSILRQDIVFFDKETNTGEVIGRISGDTVLIQDAMGEKVGKFVQLIATFIGGFAIAFAKGWLLTVVMLCMLPLLVLSGAAMAIIQGRMASRGQAAYAKAAHVLHQTIASIRTVASFTGEKQAVSNYSKFLVEAYVTGVHEGSVAGVALGTVMLLVFSGYALAVWFGAKMIMENEEKYNGGTVLNVIASFLTASMSLGEASPIMSAFAAGQAAAYKMFETIERKPVIDAYDPNGKILEDIEGEIELRDVCFSYPTRPEELIFNGFSLDIPSGTIAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWMRGKIGLVNQEPVWFASSIKDNIAYGKEGATIEEIRSACGLANATKFIDKLPQGLNTMVGEQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDRVMVNRTTVVVAHRLSTVRNADMIVVIHRGKVVEKGTHSELLKDLEGAYSQLIRLQEVNKESEETTSYHSKSELSTEPSTQLTKKRSLRRSISRGSSLGGSSSHSFSLSNGLPTGVSVPATEDEDLLLENQAQEVSLHRLASLNKPEFPVLLIGCVAAIANGVILPIFGVLISSAVKTFYEPVNEMKKDSKFWALMFVVLGLASLLVIPARAYFFSVAGCKLIQRIRVICFEKVVSMEVGWFDEPSNSSGAISARLSEIAASVRALVGDALGLLVQNITCALAGVQQRCEMMYEEASQVAKDAVGNIRTVASFCAEDKVMDLYRMKCEDPMKTGIWQGLISGLGFGVSFFLLFCVYATSFYAGARLVASGEASFSDVFRVFFALTMAAIGVSQFSTISPDSGKAKSATAAIFSIIDKKSEIDPRNESGTTLDRVEGEIEFRHVNFKYPSRPKIQIFRDLNLVIHSGKTVALVGESGSGKSTVIALLQRFYDPNSGQITLDGVPIGELQLKWFRQQMGLVSQEPVLFNDTIRGNIAYGKGGDATEAEIIAAAELANAHVFISGLQQIVLGLTLSHISHGYDTAVGERGTQLSGGQKQRVAIARAMIKSPKILLLDEATSALDAESERVVQEALDNVMVNMTTVVVAHRLSAIKNADLIAVVKDGGIVEKGSHETLVRVKDGFYASLIQLHSNASKILVP 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01292 1226 Pfam ABC transporter 365 513 IPR003439 GO:0005524
Spst4g01292 1226 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 931 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01292 1226 Pfam ABC transporter transmembrane region 82 297 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01292 1226 Pfam ABC transporter transmembrane region 679 813 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01292 1226 Pfam ABC transporter transmembrane region 814 916 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01292 1226 ProSitePatterns ABC transporters family signature. 485 499 IPR017871 GO:0005524|GO:0016887
Spst4g01292 1226 SUPERFAMILY ABC transporter transmembrane region 26 333 IPR036640 GO:0005524|GO:0016020
Spst4g01292 1226 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 346 582 IPR003439 GO:0005524
Spst4g01292 1226 Gene3D ABC transporter type 1, transmembrane domain 80 598 IPR036640 GO:0005524|GO:0016020
Spst4g01292 1226 Pfam ABC transporter 985 1146 IPR003439 GO:0005524
Spst4g01292 1226 FunFam ABC transporter B family member 1 336 585 - -
Spst4g01292 1226 ProSitePatterns ABC transporters family signature. 1118 1132 IPR017871 GO:0005524|GO:0016887
Spst4g01292 1226 Gene3D ABC transporter type 1, transmembrane domain 659 813 IPR036640 GO:0005524|GO:0016020
Spst4g01292 1226 Gene3D ABC transporter type 1, transmembrane domain 27 75 IPR036640 GO:0005524|GO:0016020
Spst4g01292 1226 Gene3D ABC transporter type 1, transmembrane domain 815 1221 IPR036640 GO:0005524|GO:0016020
Spst4g01292 1226 Gene3D - 336 585 IPR027417 -
Spst4g01292 1226 Gene3D - 956 1218 IPR027417 -
Spst4g01292 1226 MobiDBLite consensus disorder prediction 599 637 - -
Spst4g01292 1226 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 949 - -
Spst4g01292 1226 SMART AAA_5 373 559 IPR003593 GO:0016887
Spst4g01292 1226 SMART AAA_5 993 1207 IPR003593 GO:0016887
Spst4g01292 1226 CDD ABC_MTABC3_MDL1_MDL2 346 584 - -
Spst4g01292 1226 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 966 1215 IPR003439 GO:0005524
Spst4g01292 1226 PANTHER ABC TRANSPORTER B FAMILY 8 734 IPR039421 -
Spst4g01292 1226 FunFam ABC transporter B family member 1 956 1218 - -
Spst4g01292 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 956 1215 IPR027417 -
Spst4g01292 1226 MobiDBLite consensus disorder prediction 588 637 - -
Spst4g01292 1226 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01292 1226 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 307 - -
Spst4g01292 1226 SUPERFAMILY ABC transporter transmembrane region 666 950 IPR036640 GO:0005524|GO:0016020
Spst4g01292 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 584 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01292 Spst-Chr4 49544528 49554626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01292 675 1222 Calmodulin-binding Proteins AT2G36910 37.138 2.77e-105 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01292 K05658 - gmx:100800034 1766.13