Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01248 ATGGCTGAGTTCCAATTCGAATTCAATCTCGAAGAGAAATCATGGCACCTCCTCGCTCTCCTCCTCCGAATACGACACCCCGTCTATCCTCAGCACCTCGCGGCACATTGCCTTTTATTCGCTGCCTCGGCGGACTTCGTCTGCCACGTCAGCTCTCTTCCCGGTTCACCGCTCACCCTCACCGACAATGGACTTGTGATGCCATCCGTTGAAGCATTCTTTTCCCTTGGAAGCTTCTTCTCTTTCCATGTGTCCGAACCGCAACCACACCGTTTCAGGAAACGCAAACTCTTTGACTCGGTAGAAGTAGATGGTATAGAGCGTAAGAGATTAGCCATTCGAAATGGAGTTCGGGAAATGTCGTTCCAGAGTTTCGCTGATGCTGTAGAGGCTATGGTGAGAAGGAATTTCCCTGTAATAAAATTTGAATCACAGAATATAGGTAGCGGGAATTTTGTATTCCCCTTGCGTGTTGATAAAAATGAAGTGTGTTCAGGTTGTCCAATACCAAATTTTAAACATAGGGAAGCCAATAGTGATGCCAGCCCAACCATATCTAATGAGGAGGTTTGTAAATCAATTATCAAAGACTTCAGCGGTCCAAAGCTAGCGGACAATAAGAGATTCATGGCAGGTAGTCTGTTTGTTGACCGTGCTCTCTTAGATCCATCAGAATGCAAAGACGGCATTGTGAATAAAAGCCTTGGATTCGAGAAGAAAATAGATTATTTTGATACGTTTACACATGACTGTGCTGAACTAAACAGTATTCATGACGTGAATGAAGGTGGTATTAGTAAAAGTCATGCTTGCAAAAATCTACCAAGAAAACTTAAGGAAGATGATGAGATGCAAAGTGGTTCAACGAAGGGGCTGATTGATGCTGGCACGAATAGAGGCAATGAAGATGTTACTCCGATGGTCAATGCTGCACTCTGTGGAGAAGAATTGACGACTAATGGTTACAAAAAGAAGACCCCTGTCCATGCAATAAATTTGGAAAAAAAGGAGAGTGAGAGAAACACAATAACTTATAATATAGCTAATTCCTCTTCAAATCCAAAGCGTCTTTTGAAACCTTCTAGCATACTAAAGGGAGGACTGAAGAATGATCTACACCCTGAGTCACAAATTCTTAAAGAGTCACTAGCCTGCAATAAATGTAGTAACGTTCCTAAAATTGTTGATCAATCTAAAATTGATCAGAAACTTACAACGAGAAAGCAAAATCATAAAGAGAACATGGCAGAAAACATTTCCGCTACTATGCAGGTAGAGAAAAAAGCTTATCCATCATTTGAAGCTTTCACAGTAGAGGAAGAAGAAGGTTCAGGCGGTTATGGCACTGTTTACCGTGCTCAAAGAACTACTGATGGAAAACGGGTTGCAATAAAATGTCCTCATAGTAATGCTCATAAAAACCATGTAACTACTGAAAGGAATATGCTCCAGCGTTTTGGTGGTAAAAGCTTCATAATAAGGTATGAAGGTTCTTTAAAAAATGGCAACAACGACTGCTTTGTTTTAGAGCATGTTGAGCATGACAGACCTGAGGTTTTGAAAAAAGAAATTGATATAGTCCAGCTTCAATGGTACGGGTATTGCATGTTCAGGGCCCTCTATTGCTTGCACAAAGAGGGAGTTGTTCACAGAGACGTTAAACCAGGAAATTTCCTTTTCTCTCGAAAGCTAAGCAAAGGCTACCTTATTGATTTCAACCTTGCCCTGGATTTAAAGCAGAAGAACAACGTTGGAAGTAAATCCAAACCAAGCGTGGTTGCATCATCCAATCATGTTTCTCTCTCTTCTGGCTCTGCCCCTTTGGTCCGAGACAAGAACCTTGGGCGCAGCAAGTCTTTAACATCCAATAAAAGGACTTTGGCAGATTATAAGAATTATTCTGAACTTAATAGGCATGTAAAGCAAAAGGCTTATACTGGCCCTCTTAAAAGTTGTCCTGACAAGGCTGGTGGTAGTTTTCTTAGAGCACAAGGAACAGACGGCTCTGGTATAACTTCTGCGAGAGATGCTAGCACTAAGACTGCTTCTGCAGAGAGGCTCAGGGAACCTTTACCATCCCATGGAAGAAAGGAGCTTATCAGCTTTGTGAATACTATGAAATGTGCTAACAACAGTTCAACAATAGGTCCTTCTTCTCAAAGGAAAAGGGTTACTGCTCCCTCAAGCAGGGTAGATGGCAAGATTTTTCATATTACCCCGATGCCTATGCATTCATCTACTAATTGTGCGGGATTATTGAGAATCAAAGGAGATGGAAAACAGAAAAAAGAAGGTTCATGTGTTGGAACCAAAGGATTCCGTGCTCCGGAGGTTTTGTTAAGATCGCAGCATCAGGGACATAAGATTGATATTTGGTCAGCTGGGGTCACTCTACTCTACATGGTGATCGGGAAGACTCCTTTCACTGGCGACCCAGAACAGAATATAAAAGAAATTGTTAAATTGCGGGGCAGTGAAGAGTTTTGGGAAGTGGCCAAGCTACATGACCGTGAAGTGTCTTTTCCTGTGGAGTTACTTGATGAGCGATACTTGCAGTCATGGGAATTGGAAGCCTGGTGCAAAACTCACACAAAGAGACCAGAGTTTCTTGAGCAGATCCCGAAATCGTTTTTTGACTTGATCGACAAGTGTCTGACTGTTAACCCAAGAAATAGACTTAGTGCTGACGATGTTCTAAGACATCAATTCTTTGACTCAGTTACTGAGTCTCTGCGGAAGCAAAGGATGATGCATCGATCTATCAGATCAGAGGCTGCAGCTTCTTTAGCAATCTGA 2796 0.4217 MAEFQFEFNLEEKSWHLLALLLRIRHPVYPQHLAAHCLLFAASADFVCHVSSLPGSPLTLTDNGLVMPSVEAFFSLGSFFSFHVSEPQPHRFRKRKLFDSVEVDGIERKRLAIRNGVREMSFQSFADAVEAMVRRNFPVIKFESQNIGSGNFVFPLRVDKNEVCSGCPIPNFKHREANSDASPTISNEEVCKSIIKDFSGPKLADNKRFMAGSLFVDRALLDPSECKDGIVNKSLGFEKKIDYFDTFTHDCAELNSIHDVNEGGISKSHACKNLPRKLKEDDEMQSGSTKGLIDAGTNRGNEDVTPMVNAALCGEELTTNGYKKKTPVHAINLEKKESERNTITYNIANSSSNPKRLLKPSSILKGGLKNDLHPESQILKESLACNKCSNVPKIVDQSKIDQKLTTRKQNHKENMAENISATMQVEKKAYPSFEAFTVEEEEGSGGYGTVYRAQRTTDGKRVAIKCPHSNAHKNHVTTERNMLQRFGGKSFIIRYEGSLKNGNNDCFVLEHVEHDRPEVLKKEIDIVQLQWYGYCMFRALYCLHKEGVVHRDVKPGNFLFSRKLSKGYLIDFNLALDLKQKNNVGSKSKPSVVASSNHVSLSSGSAPLVRDKNLGRSKSLTSNKRTLADYKNYSELNRHVKQKAYTGPLKSCPDKAGGSFLRAQGTDGSGITSARDASTKTASAERLREPLPSHGRKELISFVNTMKCANNSSTIGPSSQRKRVTAPSSRVDGKIFHITPMPMHSSTNCAGLLRIKGDGKQKKEGSCVGTKGFRAPEVLLRSQHQGHKIDIWSAGVTLLYMVIGKTPFTGDPEQNIKEIVKLRGSEEFWEVAKLHDREVSFPVELLDERYLQSWELEAWCKTHTKRPEFLEQIPKSFFDLIDKCLTVNPRNRLSADDVLRHQFFDSVTESLRKQRMMHRSIRSEAAASLAI 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01248 931 SMART serkin_6 436 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01248 931 SUPERFAMILY Protein kinase-like (PK-like) 424 908 IPR011009 -
Spst4g01248 931 MobiDBLite consensus disorder prediction 656 686 - -
Spst4g01248 931 Gene3D Transferase(Phosphotransferase) domain 1 406 598 - -
Spst4g01248 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Spst4g01248 931 PANTHER OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 401 913 - -
Spst4g01248 931 Pfam Protein kinase domain 437 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01248 931 Pfam Protein kinase domain 763 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01248 931 ProSiteProfiles Protein kinase domain profile. 436 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01248 931 MobiDBLite consensus disorder prediction 586 607 - -
Spst4g01248 931 MobiDBLite consensus disorder prediction 665 680 - -
Spst4g01248 931 MobiDBLite consensus disorder prediction 279 300 - -
Spst4g01248 931 FunFam Kinase like protein 744 915 - -
Spst4g01248 931 FunFam Probable serine/threonine-protein kinase DDB_G0291918 428 599 - -
Spst4g01248 931 Gene3D Transferase(Phosphotransferase) domain 1 749 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01248 Spst-Chr4 47917701 47926160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01248 768 910 Core Cell Cycle Gene Families AT2G38620 33.113 1.09e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Spst4g01248 Pkinase 2.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01248 K02214 - gmx:100783107 1463.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01248 4 47917701 47926160 Spst4g01248 4 47917701 47926160 ECH