Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01234 ATGCCTCCGAAAACGGCGAAGCGCGGGTCCGCGTCGAGCGGCTCAAAAAGGGGTGGCAGAGGCGGCAGAGGTACCTCGAAGGGTGTGCAGAGCCAGCAGCTCCATGAAGCTGCGGAAGAGGTAGTGAAGGTCGACGAGAAACAACCCATTGTTGTTGTTGCTGAGGAGGAACAATCCAAGGTGGTGGAAGAAGAGAACCCTGTGGTTGAAGAAAAACAACTTGTGGTTGAAGAGAAAAAATCTTTTGTCGTGGTTGAGGATAAGGCTATTGATATGAACCAAATGGCTCCGGAGGCTGTGGAAGAAGCGTCCCATTTGGCTAATGGGTTGACTGTGGTGAAAAACGATGAAGAGGAGGTTAAGGAATCAATAGATGAATATGAGAAAGATGAACGCTTAGATTTGGAGGATAATGATCCTGAGTATGAAGCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGGTCATGAGGTGGGAAATGAAGTAGAGGAAGAAGAGGCTGAAGATAATGTAGGTGAAGAAGAGGGTGATACAGGTGAGGAAGAAGTTGAAGATGTTCATGATGAACTCGAGGGTGAAGAGGACCGTGAGCATACTGGTGAGGAGCATGAGCACCCAGACTTTGCTGATGTGGAGGAAGAGGAACACCGGGAGGTAGTGAAGGAGAGGCGTAAGCGGAAAGAGTTTGAAGTTTTTGTTGGTGGTTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGCGAAGTAGGGGTTGTTACAGAGGTCAGGTTGATGATGAATCCTCAGACTAAGAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCTAAACGAGCTGTAGCTGAGCTCAGAAATCCTGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACCCTATATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAAGAGAAGCTGAAACACTATGGAGTTACACATGTTGAGGATTTGACCTTGGTGGAAGATACTAATGATGAAGGGAAGAACCGTGGGTTTGCATTTTTAGAATTTTCCTCTCGTTCTGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATCGATGCATTACCTCCTTCATGGGATGAAGATTATGTTCGAGATCTTCTCAAGAAATATGGAGACATTGAAAAGGTTGAGCTAGCCAGGAACATGCCTGCTGCACGGAGGAAGGACTACGGTTTTGTTACATTTGGCACACATGATGCTGCTGTAAAATGTGCTGATAGTATTACTGGCACAGATTTAGGTGAAGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCAAGACCACTTCAGAGAGGTCGTGGAAAACACATTAGTCGTGGGGACTATCGTTCCACTCGAGGATCTGGAATGATGACAAGGCCTTCATGGAGCCGACCTGCACCTCGTACTTTTACTCCACGTGGTGCAAGAGGAGTTGGAAGTCGTGCTCCACCTGTGAGACCAGTTAGTGCAAGAGATAGACGTCCTATCATGTCCATACCAGCAAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTGGCACCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATAGTCGGCGGGAAGATATACCGCCTCCAAGAAGTAGAGTTGCTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGACGACCATCTTACAGGGATTACCCTGCTCGTGGTCCTGGTCCTGGCTACACTGAGCTCCCTAGAAGCACATCTCGGGCTGCACCAAGGAGGGGCTATGTGGATGATGGTTATAGCCAAAGATTTGAGAGGCCTCCTCCTCCACCTCCTCCGCATCTAAGTTACCGGGAAGGACGTCCCCGAGATTACGATGCTCTGTCTGGTTCAAAACGTTCTTATGCTGCTATTGATGATGTCCCTCCCCGGTATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGATTAGACTATGATTATGGCGGTAGTTCTTCACAATATGGAGATGCTTATGGTGATAGACTTGGAAGATCCAGTATGGGATATGGTAGTAGCAGCAGAAGTTCTATGTCTGGTCAAGATTCACATGGGATGTATAGTAGTCGACAGGGCATGAGTTATGGAGGAGGTTCTTTTACCAGTGGTGATGTTGGGGGCTTGTACACTTCAAGAACTAGTGCTACATATACATACATGTTTTGTGTTCTTATATTTTTCTTGTGCTGCAGGTTGGTGGCAGCTCATATTCCTCAGTATATTCAGGCAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGCGGCGGATCAGGATCTTATTACTGAGGTAAGTCATCTGAGAACTTCTTGGGACTGCATTTTGTGGACTACATAG 2538 0.4626 MPPKTAKRGSASSGSKRGGRGGRGTSKGVQSQQLHEAAEEVVKVDEKQPIVVVAEEEQSKVVEEENPVVEEKQLVVEEKKSFVVVEDKAIDMNQMAPEAVEEASHLANGLTVVKNDEEEVKESIDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNVGEEEGDTGEEEVEDVHDELEGEEDREHTGEEHEHPDFADVEEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTHVEDLTLVEDTNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGDIEKVELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTDLGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSTRGSGMMTRPSWSRPAPRTFTPRGARGVGSRAPPVRPVSARDRRPIMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRDYSRREDIPPPRSRVAVDYGSRVASERRPSYRDYPARGPGPGYTELPRSTSRAAPRRGYVDDGYSQRFERPPPPPPPHLSYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSSSQYGDAYGDRLGRSSMGYGSSSRSSMSGQDSHGMYSSRQGMSYGGGSFTSGDVGGLYTSRTSATYTYMFCVLIFFLCCRLVAAHIPQYIQAGVWVVVAVIWVAADQDLITEVSHLRTSWDCILWTT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01234 845 Coils Coil 110 133 - -
Spst4g01234 845 CDD RRM_SF 238 309 - -
Spst4g01234 845 MobiDBLite consensus disorder prediction 199 226 - -
Spst4g01234 845 SMART rrm1_1 237 310 IPR000504 GO:0003723
Spst4g01234 845 SMART rrm1_1 317 396 IPR000504 GO:0003723
Spst4g01234 845 SMART rrm1_1 414 489 IPR000504 GO:0003723
Spst4g01234 845 CDD RRM_SF 415 489 - -
Spst4g01234 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 400 IPR000504 GO:0003723
Spst4g01234 845 SUPERFAMILY RNA-binding domain, RBD 231 314 IPR035979 GO:0003676
Spst4g01234 845 CDD RRM_SF 318 385 - -
Spst4g01234 845 Gene3D - 153 316 IPR012677 -
Spst4g01234 845 MobiDBLite consensus disorder prediction 687 706 - -
Spst4g01234 845 FunFam Heterogeneous nuclear ribonucleoprotein Q 317 399 - -
Spst4g01234 845 SUPERFAMILY RNA-binding domain, RBD 314 480 IPR035979 GO:0003676
Spst4g01234 845 FunFam RNA recognition water-stress protein1 403 524 - -
Spst4g01234 845 MobiDBLite consensus disorder prediction 114 128 - -
Spst4g01234 845 MobiDBLite consensus disorder prediction 588 602 - -
Spst4g01234 845 MobiDBLite consensus disorder prediction 114 226 - -
Spst4g01234 845 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 170 316 - -
Spst4g01234 845 MobiDBLite consensus disorder prediction 1 41 - -
Spst4g01234 845 Gene3D - 317 399 IPR012677 -
Spst4g01234 845 MobiDBLite consensus disorder prediction 495 682 - -
Spst4g01234 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Spst4g01234 845 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 739 - -
Spst4g01234 845 Gene3D - 403 520 IPR012677 -
Spst4g01234 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 384 IPR000504 GO:0003723
Spst4g01234 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 415 480 IPR000504 GO:0003723
Spst4g01234 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 306 IPR000504 GO:0003723
Spst4g01234 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 413 495 IPR000504 GO:0003723
Spst4g01234 845 MobiDBLite consensus disorder prediction 129 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01234 Spst-Chr4 47155139 47159770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01234 231 494 Eukaryotic Initiation Factors Gene Family AT1G49760 23.746 1.47e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01234 - - gmx:100779340 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01234 4 47155139 47159770 Spst4g01234 4 47155139 47159770 ECH
Spst4g01234 4 47155139 47159770 Spst1g01224 1 14494099 14498542 PCT