Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01219 ATGTCCTTCAATCAATCCAAGGTGGACAAGAACGACGTCGTTTACCGAAGAACCGGACGATCCTCAAGCTTTAACCAGCAAAGAGGTTCATACGGCAAGGCTGGTGGCGATGGCGGTGGAACCGTACCGTCAAACAAATCATTATCTTCTAACCGAAGTTTTAACAAGAAGTCGGATAGTGCACAAGGTGGACAGTCTAGGTTAAATCCTTCCCATGAAGGATCGATAGAGTCGAATAATGCATCTGATGCCCGAATAATTAATAATGGTACCCATGTTCAATCACAATTACATGCCATTCCCACAAGCCTTGCTAAGGCAGGAGATGAGTCTAAGGCAATCCCTTTTCAATTTGGATCCATCATTCCTGAATTTATTAATGGGATGACAATTCCTTCACATACGAATTCCATTCCTCCTAATTTGGATGAGCATAAGCATGATCAGGTTCTTGATGACTATTACAAATCTGTGGCTCCGGCGTCAGTTTCTTCTGTTCCAAAGCACCAACAACGACCTAAGAAAGATGTTGTTAATGAGCAATCTAATGTTAAGGAGATTAAAGCAAACAAGGATTCTCAGATGTCAGCTTTAACCTCAGTAAGTCAGATGTCAAAGCCTTTTGATACTCTTGTAACTGGGATTTCAATATTAACTTCATATCATCAACCACAGGCTCCTTTACAGTTTGGCGGTGCTAATACACATATTCAATCTCAAGCCATTTCAACAGCTTCCCTCCAAATTCCTATACCGATGCCTTTACCAATTGGTAATGCTACACAAGTGCAACATCCGGTTTTTGTTCCAAGTCTTCAACCACATCCTATGCACCCTCAAAGGGTCATGCATCAAGGTCAAAACATTAACTTTTCTCCTCAAATGGGTAATCATTTGCCCCATCAATTAGGCAACATAGGCACTGGCATAGGCCGTCAATATCCTCTACAGCAAGGAGGAAAGTTTACTGGTCCTCGAAAAACAACCCATGTGAAGATAACTCATCCTGAGACACATGAAGAATTAAGACTTGATAAAAGAATAGATGCATATTCAAATGGTAGTTCATCTGGTGTTAGGTCACACCCTAACATACCTTCTCAATCCCAACCTGTTAAATCTTTTCCAGCTCAACCAATGAACTATTTTTCATCCAGCTCGTACAATACCAACTCTCTTTATTATCCACCTATAATAAGTAGACCGATAACTCCAAATCCTCAACCACCAACATTTAATTATCCTGTGAACCATGATCCACAAGGTGTGAGGTTTATGAATCCATCATCACAAGGTTCCTCGACTAATAATAAGCCCAGTGGTACAACTACTATAATGGACTCATCGTCGTCCAATTCTAGTACTTCTGATTTTCAAAATGGAGAATCCCCAAGTTCAATAACATCTTGTGATGCTAGCTCCTCTGTACTACAAGAAGGGTTAAAAACTTGTTCAAAAGATTCCTCACAAGAGTCTAAGGTTTCTAGTGGTTTTGTCGCAACTATGTCTAATAATGAAGGTGAAAGGGAATCTCTTAGTAGTTATAACTCTTTGGAAGATAAGAAATTAGAGAAGAAAGGTCAATTATCACAACATCAGGTTTCCATACAGTCTCCCACATCAGAGCTTTCTCAAGTTGTTGATCGTGGTATATCTAATATTGAAGTGAAAACCAATGGGCCTATAAAACCCTCTTCTAATGTTTCAATAGAAGGATATGGTGCACAAACTGTATACAAAGTTCACAATCATATGCCTAATAAGACATATGAAGTAGTTGAAGGAAATTCTGCCCCATCAGATGTGCAAGTTATTGATCTTCCAAATACAACACTGAAGCATGTTAAGAATGGTTCAAAGAATGTTGATGGTGAGTTAGGTACCAAGGATAAACCAATTATAGAACCAAATAAGTTGAAAAGTTCATCTAAAGGGAAGAAGAAAAGAAGAGAGATACTTCAGAAAGCAGATGCTGCTGGGTCAACTTCTGATCTATATAATGCATACAAGGGAGCTGAGGAAATGAAAGAGGATGTCTTAAGCTCCGAGATCAAGGAAAGTCTTACTACTTCTCGAAGTTTGAAGCAATTTAATGTTGGTCAGTTAGATGCTATAGAAAGTGGAAAATGTGGTCACAATAAAGCTGAACTTGATGATTGGGAGGATGTTGCGAACATGTCTACGCCTAAATTGGAGATTCCTGATAAATCTCAAAATGTTGGTGATGGACATGGAAGTACAACAAAAAAATATTCACGTGATTTTCTTCTAAAATTTGTAGAGCAGTGCATTGATCTTCCTGAAGGTTTTGAAATCACCACAGACATTGGAGCTTTGATGAATACCAATGTTGGTGGTTCTCATATTTTTGAGCGTGATTCACATCTTAGTCGAGGAAGAAATGTAGATAGACAAGGTGGGATGTCTCGGATGGATCTTCGTGGGGATATGATTATGGAGGATAATAGATGGAACAAAGTTTATGGTACTTATCGTTCTGGCCGTGGTCCGGAAAGCATGGGAGGTAATTCAGGATTTCGATTTGGTCAAGGAGGCAATTTCGGTGTTTTAAGAAACCCTCGTGCACAAGCACCACCACAATATAGTGGAGGGATCCTTTCTGGCCCAATGCAATCTGGGGGAAATCAAGGTGGAGGAAATAGCCTTGATAAAGAGAGGTGGCAACGATCCTTCCAACAGAGGGGTTTAATTCCTTCTCCTACTCAAGCTCCTTTACAATTAATGCATAAAGCTGAGAATAAGTACGAAGTGGGTAAAGTGACAGATGTGGAAGAAGTCAAACAGAGGCAATTAAAAGCTATCTTGAACAAACTAACACCGCAAAATTTTGATAAACTCTTTGAAAAGGTGAAAGAAGTTAATATTGACAATGCAATCACCCTCATTGGTGTTATCTCACAAATCTTTGAGAAAGCTCTTACAGAACCTACCTTTTGTGAAATGTATGCCAACTTTTGTTTACATTTGGCTTCTGAGTTGCCTGATTTTAGTGAGGACAATGAAAAAATAACTTTCAAAAGGTTATTATTAAACAAGTGCCAGGAGGAATTTGAGAGGGGTGAAAGAGAAGAAGAAGAAGCAAATAAGGTTGATGAGGGTGAGGTTAAGCAATCTACTGAGGAAAGAGAAGAAAGAAGAGTTAAGGCACGAAGACGCATGTTGGGAAACATTAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACGGAAAGGATAATGCATGAGTGTATCAAGAAGTTATTAGGTCAATATCAAGATCCAGATGAAGAGAATATTGAAGCTTTGTGCAAGCTAATGAGTACTATTGGGGAGATGATTGACCATCCAAAAGCCAAGGAACATATGGATGCATATTTTGAAAGGATGAAATTATTATCAATCAACATGGCTTTATCTTCTAGGGTGAGGTTCATGTTGAAGGATGCCATTGATTTGAGAAAGAATAAATGGAAACAAAGGAGGAAAGTAGAAGGTCCGAAAAAGATTGACGAGGTACATAGGGATGCTGCGCAAGAAAGGCATGCCCAAGCTGGTAGGTCTGGTCGTGGTCTTGGCAATAATCAATCAACTAGAAGAAATCCCATGGATTTTGGTCCAAGGGGATCATCCACGTTGTCACCCTCGAATTCTCAAATGGGTGGATTACGTGGTCTTTCAACTCAAGTTTCTGGGCATGGTGGCTATCAGGATTCTCGATTTGAGGAACAACAATCTTATGAGGCTAATAAGACCTTGTCAGTTCCATTGCCTCAAAAACCTCTAGGAGATGATTCTATAGTCTTGGTACCCCAAGGTGGTCTTGCTAAGGGAATGTCTACGAGAGGATCAACCACAATTTCTAATTTGTCAATATCTGATGTTATTCCTTTACCTAAAGACTCTAATAAAATGACTACAAGTCTCAATGGTCATAATAATTTATCAGAGCGCACACCATATAGCAAGTCTTTAGATCCATCTACCTATGATCAATCAACTTCTCCAGAACATAATATAAATCATGGTAACAAAGACTTCAGGAGTGTTTCACCTCCTACTCAGTTGCAAAGGTCAATAGTCTCTCAAAATGAATTTTCAAAGAACATTTGGTCAGAAGAACAACTGAGGGACATGTCCTTGTCAGCCATAAAAGAATACTACAGTGCTAGAGACGAGAATGAACTTGCATTATGTGTCAAAGATTTGAACTCTCCAAGCTTCCATCCTTCTATGGTTTCTCTCTGGGTCACAGATTCATTTGAGAGGAAGGACACAGAAAGAGATCTTTTGGCCAAACTACTTGTCAACTTTGTGAAATCTAAGCAAGGCACCTTGAGTCAAGTCCAGCTCATCAAAGGGTTTGAATATGTTCTCTGTACATTGGAGGATGTCGTTAATGATGCCCCTAGAGCAGCAGAGTTTCTTGGTCGAATTTTTGCTAAAGTCATAACAGAGAATATAGCTTCTTTTAATGAGATTGCACAATTAATACATGATGGTGGAGAAGAGCCAGGTAGTCTCTTAGAAATTGGACTTGCAGCTGATGTTCTTGGAAGCATGTTAGAGGTAATTCAAAGTGAAAAGGGGGACATGGTTCTAAATGAGATCCTTTCAAGAAGTTCTAATTTTCAATTGAAAACTTTCCAACCACCTAATGGTAAAATATCAAGGAAGTTGGAAAAATTTATTTAG 4695 0.3902 MSFNQSKVDKNDVVYRRTGRSSSFNQQRGSYGKAGGDGGGTVPSNKSLSSNRSFNKKSDSAQGGQSRLNPSHEGSIESNNASDARIINNGTHVQSQLHAIPTSLAKAGDESKAIPFQFGSIIPEFINGMTIPSHTNSIPPNLDEHKHDQVLDDYYKSVAPASVSSVPKHQQRPKKDVVNEQSNVKEIKANKDSQMSALTSVSQMSKPFDTLVTGISILTSYHQPQAPLQFGGANTHIQSQAISTASLQIPIPMPLPIGNATQVQHPVFVPSLQPHPMHPQRVMHQGQNINFSPQMGNHLPHQLGNIGTGIGRQYPLQQGGKFTGPRKTTHVKITHPETHEELRLDKRIDAYSNGSSSGVRSHPNIPSQSQPVKSFPAQPMNYFSSSSYNTNSLYYPPIISRPITPNPQPPTFNYPVNHDPQGVRFMNPSSQGSSTNNKPSGTTTIMDSSSSNSSTSDFQNGESPSSITSCDASSSVLQEGLKTCSKDSSQESKVSSGFVATMSNNEGERESLSSYNSLEDKKLEKKGQLSQHQVSIQSPTSELSQVVDRGISNIEVKTNGPIKPSSNVSIEGYGAQTVYKVHNHMPNKTYEVVEGNSAPSDVQVIDLPNTTLKHVKNGSKNVDGELGTKDKPIIEPNKLKSSSKGKKKRREILQKADAAGSTSDLYNAYKGAEEMKEDVLSSEIKESLTTSRSLKQFNVGQLDAIESGKCGHNKAELDDWEDVANMSTPKLEIPDKSQNVGDGHGSTTKKYSRDFLLKFVEQCIDLPEGFEITTDIGALMNTNVGGSHIFERDSHLSRGRNVDRQGGMSRMDLRGDMIMEDNRWNKVYGTYRSGRGPESMGGNSGFRFGQGGNFGVLRNPRAQAPPQYSGGILSGPMQSGGNQGGGNSLDKERWQRSFQQRGLIPSPTQAPLQLMHKAENKYEVGKVTDVEEVKQRQLKAILNKLTPQNFDKLFEKVKEVNIDNAITLIGVISQIFEKALTEPTFCEMYANFCLHLASELPDFSEDNEKITFKRLLLNKCQEEFERGEREEEEANKVDEGEVKQSTEEREERRVKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEENIEALCKLMSTIGEMIDHPKAKEHMDAYFERMKLLSINMALSSRVRFMLKDAIDLRKNKWKQRRKVEGPKKIDEVHRDAAQERHAQAGRSGRGLGNNQSTRRNPMDFGPRGSSTLSPSNSQMGGLRGLSTQVSGHGGYQDSRFEEQQSYEANKTLSVPLPQKPLGDDSIVLVPQGGLAKGMSTRGSTTISNLSISDVIPLPKDSNKMTTSLNGHNNLSERTPYSKSLDPSTYDQSTSPEHNINHGNKDFRSVSPPTQLQRSIVSQNEFSKNIWSEEQLRDMSLSAIKEYYSARDENELALCVKDLNSPSFHPSMVSLWVTDSFERKDTERDLLAKLLVNFVKSKQGTLSQVQLIKGFEYVLCTLEDVVNDAPRAAEFLGRIFAKVITENIASFNEIAQLIHDGGEEPGSLLEIGLAADVLGSMLEVIQSEKGDMVLNEILSRSSNFQLKTFQPPNGKISRKLEKFI 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01219 1564 SMART if4_15 935 1157 IPR003890 GO:0003723|GO:0005515
Spst4g01219 1564 MobiDBLite consensus disorder prediction 860 890 - -
Spst4g01219 1564 Gene3D - 1368 1564 - -
Spst4g01219 1564 SUPERFAMILY ARM repeat 931 1159 IPR016024 -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 401 472 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 872 890 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 1 78 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 42 78 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 1189 1237 - -
Spst4g01219 1564 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 290 1563 IPR045208 GO:0003743
Spst4g01219 1564 MobiDBLite consensus disorder prediction 616 651 - -
Spst4g01219 1564 SUPERFAMILY ARM repeat 1370 1562 IPR016024 -
Spst4g01219 1564 Coils Coil 1017 1037 - -
Spst4g01219 1564 Gene3D - 935 1170 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 351 373 - -
Spst4g01219 1564 Pfam MIF4G domain 935 1157 IPR003890 GO:0003723|GO:0005515
Spst4g01219 1564 MobiDBLite consensus disorder prediction 1027 1051 - -
Spst4g01219 1564 FunFam Eukaryotic translation initiation factor 4G 1369 1563 - -
Spst4g01219 1564 ProSiteProfiles MI domain profile. 1375 1499 IPR003891 -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 618 641 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 161 182 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 1157 1183 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 1157 1237 - -
Spst4g01219 1564 Pfam MA3 domain 1381 1488 IPR003891 -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 1301 1351 - -
Spst4g01219 1564 SMART ma3_7 1376 1490 IPR003891 -
Spst4g01219 1564 FunFam Eukaryotic translation initiation factor 4G 935 1170 - -
Spst4g01219 1564 MobiDBLite consensus disorder prediction 423 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01219 Spst-Chr4 46556829 46565309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01219 1 505 Eukaryotic Initiation Factors Gene Family AT3G60240 33.559 1.73e-71 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01219 K03260 - gmx:100819084 2130.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01219 4 46556829 46565309 Spst4g01219 4 46556829 46565309 ECH
Spst4g01219 4 46556829 46565309 Spst1g00026 1 407875 416720 PCT