Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01216 ATGTTCATTGCTCTTTCTGCCCTTATTCCTGGCTTGAAAAAGATAGACAAACTTTCTGTTCTTAACAATGCTGTGGAGTATGTGAAGTATCTTCAGCAGCGTGTGAAAGAGTTGGAGCAAGTGAACAAGAAGAGGAAGATGCAATCAGAAGGATGCTTCAAACAAAGCAAAAGCAACGAGGTTGCTTATGACTCTTCATGGACCTCTCATCATCATGATGATAAAGGTATCAAGAACTGTTCGAAAGTTGAAGCTAGAGTTGCAGGAAAAGATGTACTCATCAGAGTAACGTGTGAGGTGCAAAAGAACATTGTACGAAATGTAATGGCCAAGGTTGAAGCTCATAATCTCTACATAGTTTCCAGCAATGTTTTGCCTTTCGGGAATTCCACTCTCGCCATTACCACCATTGCTAAGGTACACACTGTTCTTATAATGTCGTGTTATGAAGAGACCAACCAG 462 0.4069 MFIALSALIPGLKKIDKLSVLNNAVEYVKYLQQRVKELEQVNKKRKMQSEGCFKQSKSNEVAYDSSWTSHHHDDKGIKNCSKVEARVAGKDVLIRVTCEVQKNIVRNVMAKVEAHNLYIVSSNVLPFGNSTLAITTIAKVHTVLIMSCYEETNQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01216 154 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 31 IPR011598 GO:0046983
Spst4g01216 154 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 49 IPR036638 GO:0046983
Spst4g01216 154 Gene3D - 1 55 IPR036638 GO:0046983
Spst4g01216 154 PANTHER BHLH TRANSCRIPTION FACTOR 2 147 - -
Spst4g01216 154 Coils Coil 21 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01216 Spst-Chr4 46529324 46530175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01216 2 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.611 2.15e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01216 - - vun:114166535 189.889