Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01207 ATGCTCCGCCGCGCAACCTCCGCCCTACTCTCCGGTGCCTCCCGCCGCCGCCTCTCCACCGATGTGCCGGCGACGCCCGCGGCAGATTCGAGCTTTGCGGAGGCCTGGAAGAAAGTGAGCCCGAATCTGGAGCCTCCGAAGACCCCGCTCTCGTTCATGAAGCCACGTCCGCCAATTCCTTCGACCCTCCCTTCTAAACTCACCGTCAACTTCGTCCTCCCCTACGCTTCCCAATTGTCCGCAAAAGAGGTTGACATGGTGATTGTACCAGCAACAACTGGGCAGATGGGTGTTCTGCCAGGACATGTGGCAACAATTGCTGAGTTGAAACCTGGTGTGCTCTCCGTACATGAAGGGAACGATGTGACAAAGTATTTTGTGAGCAGTGGGTTCGCATTCATCCATGGAAACTCAGTGGCTGATATAGTAGCTGTTGAGGCTGTGCCAGTAGATCGAATTGATGTCAATCTTGTCCAGAAGGGCCTTCAAGATTTCACTCAGAAGCTCAACTCAGCCTCCACTGATTTGGAGAAAGCTGAAGCTCAGATTGGTGTTGACGTCCATAGCGCTCTCAACTCTGCTCTTACAGGCTGA 594 0.5421 MLRRATSALLSGASRRRLSTDVPATPAADSSFAEAWKKVSPNLEPPKTPLSFMKPRPPIPSTLPSKLTVNFVLPYASQLSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHGNSVADIVAVEAVPVDRIDVNLVQKGLQDFTQKLNSASTDLEKAEAQIGVDVHSALNSALTG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01207 197 NCBIfam ATP synthase F1 subunit epsilon 72 182 IPR001469 GO:0015986|GO:0045261|GO:0046933
Spst4g01207 197 Coils Coil 162 182 - -
Spst4g01207 197 Hamap ATP synthase epsilon chain [atpC]. 65 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Spst4g01207 197 CDD F1-ATPase_delta 67 190 IPR001469 GO:0015986|GO:0045261|GO:0046933
Spst4g01207 197 Gene3D - 61 154 IPR036771 -
Spst4g01207 197 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 67 139 IPR020546 GO:0015986
Spst4g01207 197 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 67 148 IPR036771 -
Spst4g01207 197 FunFam ATP synthase delta 56 153 - -
Spst4g01207 197 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 29 197 IPR001469 GO:0015986|GO:0045261|GO:0046933
Spst4g01207 197 Gene3D - 155 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01207 Spst-Chr4 46341623 46343802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01207 1 197 Primary Pumps ATPases AT5G47030 68.687 1.36e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01207 K02134 - gmx:100799603 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01207 4 46341623 46343802 Spst4g01207 4 46341623 46343802 ECH