Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01205 ATGGAAGACTCGTGGGAGAGTTGGATTTCTTCTTTGGAAATGGGTGAGACCAAATCCATTGGTCAATCTTACATTAACTCACTTGATCAAGATAAGTTCCTGAATGAGATTGACACCACCATGGGAAGTAGTAGCTTGTCCTGCGAAGATGCAAGCTTTGATGAGAGGCAAGGGAAGATGCTCAAGAGTAATAGCTCAACCTCCATCATTTCTCAAGATGTTGCTAACAATGCTTCTTCAGCACCATCCTCGACATTCCCCTTCATTTTGTCCTTTGAAAACTCATCTGTGAAACCTTCCCTCCATCATAGACCTAATGAAACTGGTAATTCCCCTAACCATTTTGCTCCATGTTCTTCACTTTTGACCTCAGAAAGTGGCCATGTCACCAAACCAAAGGCCAAACAAGGAGGTCCCAAGAAGCATAGAAGCTCATCTGAGATCCAAGATCACATCATGGCTGAGAGAAAAAGGAGACAAGAACTCACTGAAAAGTTCATTGCACTTTCTGCCACCATACCAGGATTGAAGAAGGATGACATGGGAGAGACAGACAAGGCCTATGTACTTAGAGAAGCAATCATATACATGAAACAACTTCAAGAGAGAGTGAAGGAGCTTGAGAATCAGAACAAGAGAAAAACAGCAGATTCAAGAATATTGGTCAAGAAATATTTCCAAGTGTGCTCAAGAGAAGAACAAATCATCACATCATATGATGAAACCAAGTCTCATAGATCAACACCTTCACTACCTCAGGTTGAAGCAAGAGTGATGGAAAAGGAGGTTCTCATTGGAATCCACTGCCACATACAGAAGGACATTGTGCTCAAAATCATGGCCTTCCTCCAAAATCATCATCTCTCTCTTGTTAGCAGCAGTGTGTTGCCCTTTGGGACTTCCACTCTCAAAGTTACAGTCATTGCCCAGATGGGAGAAAAATACTGCACGACCATGACTGATCTTGTAAAAAGCCTGAGACAACATATCTCGTGA 996 0.4227 MEDSWESWISSLEMGETKSIGQSYINSLDQDKFLNEIDTTMGSSSLSCEDASFDERQGKMLKSNSSTSIISQDVANNASSAPSSTFPFILSFENSSVKPSLHHRPNETGNSPNHFAPCSSLLTSESGHVTKPKAKQGGPKKHRSSSEIQDHIMAERKRRQELTEKFIALSATIPGLKKDDMGETDKAYVLREAIIYMKQLQERVKELENQNKRKTADSRILVKKYFQVCSREEQIITSYDETKSHRSTPSLPQVEARVMEKEVLIGIHCHIQKDIVLKIMAFLQNHHLSLVSSSVLPFGTSTLKVTVIAQMGEKYCTTMTDLVKSLRQHIS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01205 331 PANTHER BHLH TRANSCRIPTION FACTOR 26 330 - -
Spst4g01205 331 Pfam Helix-loop-helix DNA-binding domain 150 201 IPR011598 GO:0046983
Spst4g01205 331 Gene3D - 138 230 IPR036638 GO:0046983
Spst4g01205 331 MobiDBLite consensus disorder prediction 98 130 - -
Spst4g01205 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 200 IPR011598 GO:0046983
Spst4g01205 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 217 IPR036638 GO:0046983
Spst4g01205 331 MobiDBLite consensus disorder prediction 98 150 - -
Spst4g01205 331 SMART finulus 152 206 IPR011598 GO:0046983
Spst4g01205 331 Coils Coil 190 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01205 Spst-Chr4 46324821 46329710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01205 8 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.718 7.32e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g01205 HLH 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01205 - - gmx:100786209 392.889