Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01203 GGTGCAGGGCAGGCAGTGGCACTCAGAGTAACAGCAGATCGTTGTGCTTTCTATAATTGCAGGTTCCTTGGGTGGCAGGACACACTGTACTTACATTATGGAAAGCAATACTTGAAAGATTGTTACATTGAAGGGAGTGTGGACTTCATTTTTGGTAATAATACTGCACTCTTGGAACATTGTCACATCCATTGCAAGTCCGCAGGGTTTATAACCGCACAGAGCGAAACTCTCCACGGGAAAAAGCTGGTTATGTATTCCCGAGATGTGTTGTCACAGGTAATGGGGGAACTTCATATGCATATCTGGGAAGACCATGGAGACCTTTTGCAAGAGTGGTGTTCTGGACCGGGTTTCTGCCCATCCCAAAGAGTGAAATGGGCCAGAGAATTGAAGAATGAAGGAGCTGAGCAGTTTCTGAGTCACACCTTCATTGATCCAGAATCAGACAGATCTTGGCTTCCTCAAAGAATGACCTTCAATTATTAA 489 0.4499 GAGQAVALRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNNTALLEHCHIHCKSAGFITAQSETLHGKKLVMYSRDVLSQVMGELHMHIWEDHGDLLQEWCSGPGFCPSQRVKWARELKNEGAEQFLSHTFIDPESDRSWLPQRMTFNY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01203 162 SUPERFAMILY Pectin lyase-like 3 153 IPR011050 -
Spst4g01203 162 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 84 154 - -
Spst4g01203 162 ProSitePatterns Pectinesterase signature 2. 43 52 IPR033131 -
Spst4g01203 162 Pfam Pectinesterase 3 75 IPR000070 GO:0030599|GO:0042545
Spst4g01203 162 Gene3D - 1 92 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01203 Spst-Chr4 46263938 46265616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01203 4 155 Carbohydrate Esterase AT3G05620 34.211 3.22e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01203 K01051 - gmx:100810259 217.238