Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01187 ATGGCTTCTCCGCCACCGTTAACGCTAAACTTCGTCGGATCAGATACGGACAGCACCTTCCCAACCGTCGTTTCAAGTTCCCTATCGCCGCCGTCGCCACGCCATTCGTCTCCCTTACAGAGCCTCAGTCCCAGCATTCTTATTATCGTTATCGTCCTCGCCGTCACCGTTATCGTCTCTCTCGCTCTCTGCTTCCTCCTCCGTCACCTCAACCGCCGCTGCCTCAACCGCTTCTCCTCCTCCGCCGCCGCACCTTCGGCCTCCGCCACGCCGATATTCTCCTCCAGCCGCCGTATCTCGCCAGAGATTGTCCACTCCTCCTCCTCCTCCGCCGCCTCCGTCATCGACACGCTCCCGCTCTTCACGTTCTCCTCTGTCACGCGCCGCTCCGCCTCTGCCGCCGCTGACTGCGCCGTCTGCCTCTCCAAGTTCCATAACCACGACCTCCTCCGCCTCCTTCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACTTGGCTCCAGTCCAACCTCTCGTGTCCGCTCTGCCGCTCTCCCATCGCCGCCGCGGAATCCGAACTCGCCAAAATCCTCCGTCCGCCGTCCTCCGCCGCTGGCAGTAGCGACAGCTTCCGCCTCGAGTTAGGAAACATCAGCCGCCGTGGCGCCGAAGGCGCCGCCACCGCTCGCGGCGATACACGTTCGCGATCCTATTCCATTGGTTCGTTCGAGTATCTAGTGGACGACGAGTCGGAGGTCGCGTTCAGCCACGCGCGCCAGAGAAGCGAAGACGACGTGAAGGAGTTTCCCACAGCGGAGGCTCAGACTCAGGCCACTAATAACGAGGCTCAGACTCTGGCCGGCGAGGTCGCCGGCGTCAGGAGCTGGCTTAAGGACTACATGGACAGGTTTTCCGCTTCTATTTCGTCGAGAACGGCGTCTTTTCGAAGCTCTGGAAGGTTCTTCAGTGGCGGCGGGAGTAGTCGCCGAAGCGATGTCGTTCCGGTAGCTGCAGAATACGACTTGGACGGAAATCGAATTGGCGAAGAGATCAGCGAAATGTTTCGGTGGCTTTCAGGGGTATGA 1071 0.6078 MASPPPLTLNFVGSDTDSTFPTVVSSSLSPPSPRHSSPLQSLSPSILIIVIVLAVTVIVSLALCFLLRHLNRRCLNRFSSSAAAPSASATPIFSSSRRISPEIVHSSSSSAASVIDTLPLFTFSSVTRRSASAAADCAVCLSKFHNHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSPIAAAESELAKILRPPSSAAGSSDSFRLELGNISRRGAEGAATARGDTRSRSYSIGSFEYLVDDESEVAFSHARQRSEDDVKEFPTAEAQTQATNNEAQTLAGEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVAAEYDLDGNRIGEEISEMFRWLSGV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01187 356 CDD RING-H2_EL5-like 136 179 - -
Spst4g01187 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 188 IPR013083 -
Spst4g01187 356 FunFam E3 ubiquitin-protein ligase ATL4 110 184 - -
Spst4g01187 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 38 297 - -
Spst4g01187 356 SMART ring_2 137 178 IPR001841 -
Spst4g01187 356 Pfam Ring finger domain 136 179 IPR001841 -
Spst4g01187 356 SUPERFAMILY RING/U-box 126 184 - -
Spst4g01187 356 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01187 Spst-Chr4 45677607 45678677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01187 42 188 Rapid Response to Elicitors AT3G05200 30.405 7.34e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01187 K10663 - gmx:100817751 419.468