Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01165 ATGTATATTTATGAAAATGACATCAATGATTGTTTGACTTTGACAGAGCTAAAAAGTCAGTTTTGGACTTCATGGCAGCCATTAGAATCACCATGCTTGTTGGAGCATGTTATTTTACCTGTGGAATTTGGGTTCTTTGTGATCTTGTTAGTTCAATTCCTAAGAAAGTTTGTGAATCTGATCAGCAAGCAAACCAAGGTCCTAGATGGTACCACAACATTGATGAATCCAACTGAAATCAAATATGGTTTTGCTTACAAAGTCTGCATTGTTTGCAACACAGTGCTGCTGGCTGTTCATGCATCACTGCTGCTACTGATGCTCAATCAGGAGTCTCAATGTAACTCAAAACTCCAGGCCTTCACATCACAGATAGTTCAATTGTTATCATGGGCTATTAGTCTTATAGCAATATGCAAGATATCAAAATCAAACACATATTTCCCTTGGATTCTGAGGGCTTGGTGGCTTTGCAGTTTCATTCTGAGTATTATAAGCACAGGCCTTCATGTTCATTTCAGTGTCACCAACCATGGTCAGATTAGTATAAGAGAATGTGCAGATTTCCTTGGTTTGCTTGCTTCAACATGCCTTTTGGTTATTTCCGCAAGAGGGAAGACAGGAACTGTGTTGCTTGCCACAAATGGTGCAGCTGAACCACTTCTTGGAGAGAAAACTGAGAGACATTCAGAGTGTCAAAAGGAATCTCCATATGGAAAAGCCACTCTTCTCCAACTCATTAACTTCTCGTGGCTCAACCCCTTGTTTGCAATAGGGTATAAGAAACCCCTTGAACAGAACGACATTCCTGATGTTGACATCAAAGACTCTGCTGAGTTTTTAACCTGTTCCTTTGATGAAAGCCTTAGGCAAGTCAAAGAGAAAGATGGCACTGAAAACCCATCTATATACAAGGCAATCTACTTGTTTGCTAGGAAGAAAGCAGCAATCAATGCATTGTTTGCAGTGGTAAATGCTTCAGCATCGTATGTTGGTCCTTACTTGATCACTGACTTTGTGGATTTCTTGGGAGAGAAGGAAGCGCGTGGCTTGAAGACTGGATACCTTCTGTCATTGGCTTTTCTCTGTGCCAAAATGGTTGAGACCATAGCTCAGAGGCAATGGATTTTTGGAGCCAGGCAATTAGGCCTTCGTCTCAGAGCGGCGATGATATCGCATATATATCAGAAGGGCCTACATCTGTCGAGTAGATCGCGCCAGAGTCACACAGGTGGTGAGATAATGAACTACATGAGTGTAGATGTTCAGAGAATCACAGATTTTGTTTGGTATGTAAATGTAATATGGATGCTGCCTATACAAATTTCTTTAGCAGTGTTCATTCTGCATACAAATCTAGGGCTAGGTTCATTGGCTGCACTAGCTGCTACATTGGGAGTAATGACTTTGAATATACCTCTAACTAAGATACAGAAAAGATACCAAGCCAAGATCATGGAAGCCAAGGACAACAGGATGAAAGCCACTTCAGAAGTTCTCAGAAACATGAGGACTTTGAAGCTTCAAGCATGGGACAGTCAATTTTCTCAAAGGATAGAAGCACTTAGGAATGTAGAGTATAGTTGGCTAACGAAGTCGTTGAGGCAAGCAGCATTTTCTGCCTTTATCTTTTGGGGATCACCTACATTCATTTCTGTGATAACCTTTTGGGCATGCATGTTGATGGGGATTGAGCTGACAGCGGGAAGGGTCTTGTCTGCATTTGCCACTTTCCGAATGCTGCAGGATCCTATATTCAGCCTACCTGATTTGCTCAATGTCATTGCTCAAGGGAAAGTTTCAGTTGATAGGATCGCTTCCTTCCTTCGCGAGGAAGAAATCCAGCATGATGTAATTGAAAATGTTGCAAAGGAGAAAACAGAATTTGACATAGTTATTGAGAAAGGGAGATTCAGCTGGGATCCTGATTCAACAACTCCAACCATTGATGAAATAGAGTTGAAAGTTAAGAGGGGAATGAAGGTAGCAGTTTGTGGATCTGTAGGTTCAGGAAAGTCTAGTCTGCTATCAAGCATTTTGGGAGAAATATATAAACAGTCTGGGTCAGTTAAGATCAGTGGAACAAAAGCTTATGTTCCACAATCAGCTTGGATACTGACTGGAAATGTAAGAGACAACATCACCTTTGGAAAAGAGTACAATGGTGAGAAGTATGAGAAAACTGTTGAGGCATGTGCATTGAAAAAGGACTTTGAGCTATTCTCAGGTGGTGACATGACAGAGATTGGAGAAAGAGGGATTAACATGAGTGGGGGACAGAAGCAAAGGATACAGATTGCTAGAGCAGTTTACCAGGATGCTGACATTTACCTTTTTGATGATCCTTTCAGTGCTGTTGATGCTCATACTGGCACTCACCTCTTTAAGGAGTGCCTTATGGGGATTCTCAAAGAGAAAACTATAATTTTTGTTACACATCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAGCACAAGCTGGAAAATTTGAAGATCTTCTAAAGCAAAATATAGGATTTGAAGTTTTAGTTGGTGCTCATAGCAAAGCTCTAGAGTCAATTGTTGTTGCTGAAAACTCAAGTAGAACAAGTGTGAATACAATAGCTGAAGAAGGGGAATCAAACTTCAACTGCAAGTCAAGTCTTGGACTAGAGCGCACACAGCATGACAAAGTGCAAGATAATCCTCCAGAGGACAAAGGAATTGATGGAAAGTTGGTGCAAGAAGAGGAAAGAGAAACAGGAAGCATTGCAAAAGAAGTTTACTGGACTTATTTGACAACTGTCAAAGGAGGACTGTTTGTTCCTCTCATTCTCTTGGCACAGTCTTCATTCCAAATACTTCAGATTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCCACAAGTAGTGACGCCAAGCCTATATTTGACATGAATTTCATACTTCTTATTTATATGACACTCTCAGTTATTGGTTCATTGTGTGTTTTGCTGCGAGCCATGATGGTGTTAAATGCTGGACTTTGGACAGCACAGACACTTTTCACAAAGATGCTGCATAGCGTGATCCGTGCCCCCATGGCATTTTTTGATTCTACCCCAGCTGGAAGAATCTTGAATAGGGCTTCCACAGATCAAAGTGTGCTCGACTTAGAAATGGCAAACAAAATAGGATGGTGTGCTTTCTCAATAATACAGATTCTAGGAACTATTGCAGTGATGTGTCAGGTGGCATGGCAAGTATTTGTCATCTTCATCCCAGTAACTGCAGTCTGCATATGGTATCAAAGATATTATAACCCTACAGCTAGAGAACTGGCTCGCTTAGCACAGATACAGATCACTCCAATTCTCCACCATTTTTCAGAATCTTTAGCAGGAGCAGCGTCCATACGAGCTTTCGATCAAGAAGGCCGTTTCATATACACAAATCTTATCCTTGTGGATGGCTTCTCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTTTCAAATTTTGTTTTCGCCTTCTCACTGGTCATGCTAGTGAGCCTCCCTGAAGGAATAATCAATCCAAGTATTGCCGGTTTGGCAGTAACATATGGGATCAATCTGAATGTGCTGCAAGCTTCAGTTATATGGAACATATGCAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAGTACACAAATATAACAAGTGAAGCACCTCTTGTGATTGAAGACAACAGACCACCAAGCAACTGGCCCGAAACTGGAACAATATGTTTCAAAAATTTACAGATACGTTATGCTGAACATCTACCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGGAGGAAGAAGGTTGGTGTTGTAGGGCGTACCGGGAGTGGAAAATCAACTCTCATACAGGCCATTTTCAGGATTGTTGAACCAAGAGAAGGAAGCATTATAATTGACAATGTGGACATATGCAAGATAGGTCTCCATGACTTAAGGTCAAGGCTTAGTATTATCCCACAAGACCCTGCCTTGTTTGAAGGCACTGTTAGAGGAAACCTAGACCCTCTTCAGCATTACTCTGACATTGAAGTGTGGGAGGCTCTAGACAAATGTCAACTAGGCCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGATTCCCCAGTGGTTGAAAATGGTGATAACTGGAGTGTGGGCCAAAGGCAATTATTTTGCCTTGGAAGAGCCCTGCTGAAAAGAAGCAGCATACTAGTACTAGATGAAGCAACAGCCTCTGTGGATTCTGCAACTGATGGAGTGTTACAGAACATCATAAGTCAAGAGTTCAAAGATAGAACTGTTATCACAATAGCTCATAGAATCCACACAGTTATTGACAGCGATTTGGTTTTGGTACTCAGTGATGGGAGAATTGCTGAGTATGATGAACCATCAAGGTTACTTGAGAGAGAAGATTCCTTCTTCTATAAACTCATAAAGGAGTATTCTGGAAGATCACATAGCTTCAACAGCTTGGCAACTCAACATGTCCAAAGCAGGGAACAATTATAA 4560 0.4125 MYIYENDINDCLTLTELKSQFWTSWQPLESPCLLEHVILPVEFGFFVILLVQFLRKFVNLISKQTKVLDGTTTLMNPTEIKYGFAYKVCIVCNTVLLAVHASLLLLMLNQESQCNSKLQAFTSQIVQLLSWAISLIAICKISKSNTYFPWILRAWWLCSFILSIISTGLHVHFSVTNHGQISIRECADFLGLLASTCLLVISARGKTGTVLLATNGAAEPLLGEKTERHSECQKESPYGKATLLQLINFSWLNPLFAIGYKKPLEQNDIPDVDIKDSAEFLTCSFDESLRQVKEKDGTENPSIYKAIYLFARKKAAINALFAVVNASASYVGPYLITDFVDFLGEKEARGLKTGYLLSLAFLCAKMVETIAQRQWIFGARQLGLRLRAAMISHIYQKGLHLSSRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLGVMTLNIPLTKIQKRYQAKIMEAKDNRMKATSEVLRNMRTLKLQAWDSQFSQRIEALRNVEYSWLTKSLRQAAFSAFIFWGSPTFISVITFWACMLMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLREEEIQHDVIENVAKEKTEFDIVIEKGRFSWDPDSTTPTIDEIELKVKRGMKVAVCGSVGSGKSSLLSSILGEIYKQSGSVKISGTKAYVPQSAWILTGNVRDNITFGKEYNGEKYEKTVEACALKKDFELFSGGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFEDLLKQNIGFEVLVGAHSKALESIVVAENSSRTSVNTIAEEGESNFNCKSSLGLERTQHDKVQDNPPEDKGIDGKLVQEEERETGSIAKEVYWTYLTTVKGGLFVPLILLAQSSFQILQIASNYWMAWVCPTSSDAKPIFDMNFILLIYMTLSVIGSLCVLLRAMMVLNAGLWTAQTLFTKMLHSVIRAPMAFFDSTPAGRILNRASTDQSVLDLEMANKIGWCAFSIIQILGTIAVMCQVAWQVFVIFIPVTAVCIWYQRYYNPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLILVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNITSEAPLVIEDNRPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQHYSDIEVWEALDKCQLGHLVRAKEEKLDSPVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVLQNIISQEFKDRTVITIAHRIHTVIDSDLVLVLSDGRIAEYDEPSRLLEREDSFFYKLIKEYSGRSHSFNSLATQHVQSREQL 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01165 1519 Gene3D - 1245 1498 IPR027417 -
Spst4g01165 1519 Gene3D ABC transporter type 1, transmembrane domain 909 1243 IPR036640 GO:0005524|GO:0016020
Spst4g01165 1519 Gene3D ABC transporter type 1, transmembrane domain 289 617 IPR036640 GO:0005524|GO:0016020
Spst4g01165 1519 FunFam ABC transporter C family member 5 616 863 - -
Spst4g01165 1519 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1264 1496 IPR003439 GO:0005524
Spst4g01165 1519 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 631 854 IPR003439 GO:0005524
Spst4g01165 1519 FunFam ABC transporter C family member 3 1245 1497 - -
Spst4g01165 1519 SUPERFAMILY ABC transporter transmembrane region 312 613 IPR036640 GO:0005524|GO:0016020
Spst4g01165 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1494 IPR027417 -
Spst4g01165 1519 CDD ABCC_MRP_domain1 631 831 - -
Spst4g01165 1519 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 240 1499 - -
Spst4g01165 1519 CDD ABCC_MRP_domain2 1260 1480 - -
Spst4g01165 1519 CDD ABC_6TM_ABCC_D1 317 605 IPR044746 GO:0140359
Spst4g01165 1519 FunFam ABC transporter C family member 5 907 1243 - -
Spst4g01165 1519 Pfam ABC transporter transmembrane region 955 1189 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01165 1519 Pfam ABC transporter transmembrane region 317 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01165 1519 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 945 1225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01165 1519 SMART AAA_5 658 831 IPR003593 GO:0016887
Spst4g01165 1519 SMART AAA_5 1288 1480 IPR003593 GO:0016887
Spst4g01165 1519 Pfam ABC transporter 650 783 IPR003439 GO:0005524
Spst4g01165 1519 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524|GO:0016887
Spst4g01165 1519 SUPERFAMILY ABC transporter transmembrane region 931 1244 IPR036640 GO:0005524|GO:0016020
Spst4g01165 1519 Coils Coil 478 498 - -
Spst4g01165 1519 Gene3D - 626 857 IPR027417 -
Spst4g01165 1519 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g01165 1519 CDD ABC_6TM_ABCC_D2 943 1237 IPR044726 GO:0140359
Spst4g01165 1519 FunFam ABC transporter C family member 10 299 613 - -
Spst4g01165 1519 Pfam ABC transporter 1279 1427 IPR003439 GO:0005524
Spst4g01165 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 847 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01165 Spst-Chr4 44960730 44967659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01165 610 845 Calmodulin-binding Proteins AT2G36910 29.644 2.44e-22 103