Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01126 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTAGAAGTTGACATTCAGTTTGCCAATACTCTTGCTTCTGATTATCCAAGAGAAAGTGATGGAGCCTGCTTACAAATGAGATTGTCTTATAGCCCAGCTGTTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCCCTTTGCGAGAGAAAAGCCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTACAACTCCACAGAGGAATTACTGATGTAGAAGAAAGAAAACAGAAAGATTTATGTGCTACAAAGTACATGCCCAGAGATATAAGAAAAGGAAAACTATCTGAAATTGATACTGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGTTGCCCAACTGCAACCACACGTTGTGTATGAAATGCTACAGAAATTGGCATGCAAGATCTCAATCTTGCCCTTTCTGTCGGGACAGTCTTCAAAGGGTAAATTCTTGTGATCTTTGGATCTACATGAACAGCAATGAGATAACTGACCTGGCTTCAATCAATAAGGAGAATTTAAAAAGACTATTTCAGTACATTGACAAGTTGCCTCTTATTTTGTCAGATCCTTCATTCATGTCTTATCCCCAGCGCTTTTGA 723 0.397 MRKSFKDSLKALEVDIQFANTLASDYPRESDGACLQMRLSYSPAVQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSLCERKASLKDFYGVIFPSLLQLHRGITDVEERKQKDLCATKYMPRDIRKGKLSEIDTEREEECGICMEMNNKVVLPNCNHTLCMKCYRNWHARSQSCPFCRDSLQRVNSCDLWIYMNSNEITDLASINKENLKRLFQYIDKLPLILSDPSFMSYPQRF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01126 240 SUPERFAMILY RING/U-box 126 188 - -
Spst4g01126 240 FunFam RING/U-box superfamily protein 126 192 - -
Spst4g01126 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 193 IPR013083 -
Spst4g01126 240 ProSitePatterns Zinc finger RING-type signature. 160 169 IPR017907 -
Spst4g01126 240 PANTHER RING FINGER PROTEIN 41, 151 3 235 - -
Spst4g01126 240 SMART ring_2 145 182 IPR001841 -
Spst4g01126 240 ProSiteProfiles Zinc finger RING-type profile. 145 183 IPR001841 -
Spst4g01126 240 Pfam Zinc finger, C3HC4 type (RING finger) 142 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01126 Spst-Chr4 44391036 44394107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01126 94 183 C3H Transcription Factor Family AT5G01960 31.250 7.91e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01126 K25840 - gmx:100819267 405.601