Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01118 ATGGAATATGAACAGAAAACCATCACCACCAAGTTGGTGAAATCCAAATTTTTCTTGCCCAAAGTGATTCGTATTTCAGCCACGGATCACGATGCCACAGACTCCTCTAGCGAGGAAGAAGATGATGAAGAAGGGTCTTTTCACATTCACAGAGTTAAGAGAGTTGTTAATGAGATAAGAATTGTGTGTGTCAACAAGCAAAAAAGACACAACAACAATAGTTGGTGTGATGAAACTAGAGACAATGAAAGTGTGGAACTTCAACAACAACATTACACAGAGAGTATAAAGCAGCAGCACAAGTTTCGCGGCGTGCGCAGACGACGGTGGGGCCGTTGGGCCGCCGAGATAAGAGACCCTTTCCGGCGAACGCGAATGTGGCTTGGAACCTTTGACAGCGCGGAAGAGGCTGCTATGGCTTACGACAGAGCCGCTATTAGCTTCAGAGGTGCTGATGCTGTCACTAATTTAATCAAACCTCCGCCAAAAGACTGTGAAAGTGTTGTTAAACCGACGAGTTGTTGTGCATGTTCTTCACCCACTTCTGTTCTGCTGTTTCAGCCTTGGATGGAACCTTTGTCTTTGGAAGAAACCTTCAAAGAAGAAGAAGTGTTTAATGGGTTAAATGATGAAGTTGATGGTTTCTTGTTTTCTGATCATGCATTTTTCGATCAACCTCTTCCTACCCTGTTTTCTGATGTTGATGTTTCTTTGGATGAGGATCTTGAATCGTGTAAATGGGATGTAGATAATTATTTCACCGATGATGCTTTGCAATGA 780 0.4308 MEYEQKTITTKLVKSKFFLPKVIRISATDHDATDSSSEEEDDEEGSFHIHRVKRVVNEIRIVCVNKQKRHNNNSWCDETRDNESVELQQQHYTESIKQQHKFRGVRRRRWGRWAAEIRDPFRRTRMWLGTFDSAEEAAMAYDRAAISFRGADAVTNLIKPPPKDCESVVKPTSCCACSSPTSVLLFQPWMEPLSLEETFKEEEVFNGLNDEVDGFLFSDHAFFDQPLPTLFSDVDVSLDEDLESCKWDVDNYFTDDALQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01118 259 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Spst4g01118 259 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Spst4g01118 259 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 187 - -
Spst4g01118 259 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Spst4g01118 259 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Spst4g01118 259 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Spst4g01118 259 Gene3D AP2/ERF domain 100 158 IPR036955 GO:0003700|GO:0006355
Spst4g01118 259 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Spst4g01118 259 CDD AP2 109 156 IPR001471 GO:0003700|GO:0006355
Spst4g01118 259 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01118 Spst-Chr4 44141119 44141898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01118 21 202 AP2-EREBP Transcription Factor Family AT4G27950 43.284 5.93e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g01118 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01118 - - pvu:PHAVU_010G035200g 352.058