Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01117 ATGGTCCAAGTCTTCTCTTTAGCTTGGAAATTGTTTGCTTTCCCTTCTTTGACCCGTTCCACTCTGTTTTTCTCTCTCCCATTCACATTTCACTATCTTCTGAAAACCTCTCAAAGAGTAGAGTTTTCTGAAAGATTCATGGGGTTTCCTGAATTGGGTTGTCAGAAAACCCAGGTGGTACTGAACTATGCTATTTTGTTTACTTTTCAATTGGTTTTCAGTATGTGCTCTTGGGAGGGTTGTAGTGCCATGAATTTATATGTTGTGCTGTGGCATGGATTGGATAACAATCTAAGTGGCTTGGTGTGTTCATGGAAGGGTTGTAGTGCTATGGGGATCTTGGTGAAGATGATTCTGCATAGCTGGATTTTCAGTTACCATGTTGTCAGTGTCTTGTTGTTGATTAGTTGTGGCATGACCTATGGGACTGATACTGATATCTTCTGCTTGAGAAGTATTAAAGACACCCTTGAAGACCCATATAGCTATTTGAAGTTTTCTTGGGATTTCAACAACAAAACTGAAGGGTTCATCTGCAAGTTTATTGGGGTTGAGTGTTGGCACCCTGATGAGAACAGGGTCTTGAATCTCAAACTGTCCAATATGGGACTCAAGGGCCAGTTTCCTGCTGGCATTCAAAATTGCTCTAGCTTAACTGGATTAGACCTTTCAATTAACAAATTCTCTGGAACCATTCCGCGAGATATATCTACGCTAGTACCATTTGTGACCTCTCTTGACCTTTCTTCAAATGATTTTTCTGGGACAGTTCCTGTGACTCTTTCAAATTGTACCTTTCTCAATACCCTTAGACTTGATCAGAACAGACTCTCTGGTCAAATTCCTCCACAGCTTGGTATTCTGCCCCGAATTAAGGCTTTTTCGGTATCCGACAATCTTTTGACAGGGCCTGTTCCAACCTTTGGCCATTCAGTTTCAGTAAATTATGCAAATAATCAAGGCCTATGTGGAGGCACTGGATTGGGGACTTGCCAAACCAAGTCTTCTAAGAGTAACATGGCTGTTATTGCTGGAGCTGCCGCTGGTGGGGTGACTCTTGCAGCATTAGGATTGGCTGTTGGAATGTTCTTCTTTGTGCGACATGTTTCTTTCAAGAAAAAGGAAGAGGACCCCGAAGGAAACAAATGGGCAAGAAGTCTGAAAGGAACTAAACAAATTAAGGTTTCTATGTTTGAGAAATCAATTTCAAAAATGAAATTGATTGATCTCATGAAGGCTACTAACAACTTCAGTAATACCAATATCATTGCGTCTGGAGGAACGGGAACTGTTTACAGAGCTGTCCTTGGTGATGGCACAACACTTATGGTTAAGAGATTACATGAATCTCAGTACACTGAAAAAGAATTCATGTCCGAGATGGGTACACTAGGGACTGTCAAACATCGCAACCTGGTCCCTCTTTTAGGTTTTTGCATGGCCAAAAAGGAGAGGTTTTTGGTCTATAAAGACATGCCAAATGGCAACCTCCATGACCAACTCCATCCTGCTGATGGTGCGAGCACCCTTAACTGGACTACGAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGGTTAGCATGGCTTCATCATAGCTGCAACCCCCGTATTATCCACCGAAACATAAGCTCTAAGTGCATTTTGTTGGATGCAGATTTTGAGCCAAAAATTTCTGATTTTGGCCTTGCCAGACTGATGAACCCAATTGATACTCATATGAGTACTTTTGTAAATGGAGAATTTGGTGATTTAGGTTATGTTGCTCCCGAGTACACAAGAACTTTGGTTGCCACACCTAAGGGGGATGTTTATAGCTTTGGGACTGTTCTTCTTGAGTTGGTGACCGGTCAAAGACCTACCAATGTGACTAAAGCTCAAGAATCTTTTAAAGGAAATCTAGTAGAATGGATTACAGAGCTCACAAACAATGCAAAACTCCATGATGCCATTGATGAATCACTAGTCAGCAAGGATGTTGATAGTGAACTTTTCCAATTTCTAAAGGTTGCATGCAACTGTGTTCTGCCAACTCCAAAGGAGAGGCCAACCATGTTTGAAGTGTATCAGTTTTTACGAGCTATTGGGTCTAAATACAATTTCACAACTGATGATGACATATTGGTACCTTCTGATAATGGTGATACTGATAACATGGAGGAGCTTATTGTAGCTCGAGAATAA 2181 0.4136 MVQVFSLAWKLFAFPSLTRSTLFFSLPFTFHYLLKTSQRVEFSERFMGFPELGCQKTQVVLNYAILFTFQLVFSMCSWEGCSAMNLYVVLWHGLDNNLSGLVCSWKGCSAMGILVKMILHSWIFSYHVVSVLLLISCGMTYGTDTDIFCLRSIKDTLEDPYSYLKFSWDFNNKTEGFICKFIGVECWHPDENRVLNLKLSNMGLKGQFPAGIQNCSSLTGLDLSINKFSGTIPRDISTLVPFVTSLDLSSNDFSGTVPVTLSNCTFLNTLRLDQNRLSGQIPPQLGILPRIKAFSVSDNLLTGPVPTFGHSVSVNYANNQGLCGGTGLGTCQTKSSKSNMAVIAGAAAGGVTLAALGLAVGMFFFVRHVSFKKKEEDPEGNKWARSLKGTKQIKVSMFEKSISKMKLIDLMKATNNFSNTNIIASGGTGTVYRAVLGDGTTLMVKRLHESQYTEKEFMSEMGTLGTVKHRNLVPLLGFCMAKKERFLVYKDMPNGNLHDQLHPADGASTLNWTTRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHMSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGQRPTNVTKAQESFKGNLVEWITELTNNAKLHDAIDESLVSKDVDSELFQFLKVACNCVLPTPKERPTMFEVYQFLRAIGSKYNFTTDDDILVPSDNGDTDNMEELIVARE 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01117 726 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 378 491 - -
Spst4g01117 726 Pfam Protein tyrosine and serine/threonine kinase 421 690 IPR001245 GO:0004672|GO:0006468
Spst4g01117 726 FunFam Nuclear pore complex protein NUP107 143 307 - -
Spst4g01117 726 ProSiteProfiles Protein kinase domain profile. 417 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01117 726 SUPERFAMILY Protein kinase-like (PK-like) 394 691 IPR011009 -
Spst4g01117 726 Gene3D Ribonuclease Inhibitor 144 333 IPR032675 -
Spst4g01117 726 CDD STKc_IRAK 423 691 - -
Spst4g01117 726 SUPERFAMILY L domain-like 146 309 - -
Spst4g01117 726 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 150 307 - -
Spst4g01117 726 Gene3D Phosphorylase Kinase; domain 1 378 490 - -
Spst4g01117 726 Gene3D Transferase(Phosphotransferase) domain 1 492 710 - -
Spst4g01117 726 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 492 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01117 Spst-Chr4 44109818 44113130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01117 131 705 Receptor kinase-like Gene Family AT3G28450 45.299 5.94e-174 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Spst4g01117 PK_Tyr_Ser-Thr 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01117 - - gmx:100305365 946.036