Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01106 ATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAAAGCAGCTGGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTACGGGGAGATCCGTTTGATATCCAAAAACTGCTCGGCAACAGTCGGACAAGTGCGAAATGTTGGGGTAAACCAGAAAATTTTAGGTAGAGCCAAATCTAAATGTTGGCTAGGAAAGCGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGAATTTATAGCTGGACAATTAAAGAATAGAATTTCATTTCGTAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAAGCAGGTACAAAAGGAGTTCAAGTGCAGATTGCAGGACGTATTGATGGAAAAGAAATTGCGCGTGTAGAATGGATCAGAGAAGGCAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGAATATTGTTGTTATACAGTTCGAACTATTTATGGAGTTTTAGGGATCAAAGTTTGGATATTTTCTAACTAA 588 0.4048 MPLGTTIHNIEITLGKGGQLAKAAGAVAKLIAKEGKSATLKLPYGEIRLISKNCSATVGQVRNVGVNQKILGRAKSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIEFIAGQLKNRISFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGVLGIKVWIFSN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01106 195 Gene3D - 103 195 IPR036419 -
Spst4g01106 195 FunFam 30S ribosomal protein S3, chloroplastic 101 195 - -
Spst4g01106 195 Gene3D - 1 61 IPR014722 -
Spst4g01106 195 SUPERFAMILY Translation proteins SH3-like domain 1 115 IPR008991 -
Spst4g01106 195 SUPERFAMILY Ribosomal protein S3 C-terminal domain 107 194 IPR036419 -
Spst4g01106 195 PANTHER RIBOSOMAL PROTEIN L2 1 105 IPR002171 GO:0003735|GO:0005840|GO:0006412
Spst4g01106 195 ProSitePatterns Ribosomal protein S3 signature. 153 187 IPR018280 -
Spst4g01106 195 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Spst4g01106 195 Pfam Ribosomal Proteins L2, C-terminal domain 1 107 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst4g01106 195 SMART Ribosomal_L2_C_2 1 114 IPR022669 GO:0003735|GO:0005840|GO:0006412
Spst4g01106 195 Pfam Ribosomal protein S3, C-terminal domain 110 192 IPR001351 GO:0003735|GO:0006412
Spst4g01106 195 NCBIfam 30S ribosomal protein S3 109 194 IPR005704 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01106 Spst-Chr4 43978254 43980224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01106 1 102 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.593 1.11e-18 79.3