Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01033 ATGGGACACAACAGTTGTCATGTCAAAGATTTCTACACCGACCCTTTTCAGATTAGCCTCTCTTTTGCTTCATATGGTGGTAGGAGGAGGAGATTGGGGAACAACCACAAAGGTGGTGGTGGTTTTATTAGCTTAGTCTTTTTTTTGTTTCTTTTGCAAGCTTTGGCTTCTGCCATTCAGCCTGTTTCAGGGAGCTTGTGGGATGGGGTGGTTGTGACTCAAGCTGATTTCCAAGCCCTGAGAGCTATTAAGAATGAGCTGATTGATTTAAAAGGGGTTCTGAGGAGCTGGAATGATAGTGGTGTTGGTGCTTGTTCTGGAGGGTGGGCAGGAATCAAGTGTGTGAATGGTGAGGTTATTGCTATTCAGCTTCCTTGGAGAGGGTTAGGTGGTAGGATCTCTGAGAAAATTGGTCAACTTCAGTCTCTTAGGAAGCTCAGTCTTCATGACAATGCTCTTGCTGGTCCAGTTCCTTTGTCACTTGGCCTCCTTCCTAACCTTAGAGGTGTTTATCTCTTCAATAACAAGCTCTCAGGTTCTATCCCTCCTTCCCTTGGAAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAACAATTCCCTCAGTGGTAATATTCCTCCCAGTTTAGCAAGATCCACTAGGATATATAGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTAACTATGTCTCCTTCTCTGACCGTTCTTGCCCTCCAACACAACAACCTCTCTGGTTCTATCCCAGATTCTTGGGGTGGAGCTGGAAAGAAGAAAGCTTCCCAGCTTCAAGTTTTGACCCTTGATCACAATTTCATCTCTGGAACCATCCCAGTTTCTCTAGGCAAGCTAGCTTTACTCGAAAATGTTTCTTTGAGTCATAACCAAATTGTAGGGCCTATTCCAAGTGAACTAGGTGCACTTTCCAGGCTTCGGATTCTTGATCTTTCCAACAATGCCATCAATGGCAGCCTTCCTACTAGCTTCTCTAACCTCTCTTCTCTAGTTTCATTAAACCTGGAGAGCAATCAACTTGCAAACCGTATTCCAGATTCTTTGGATAGGTTGCACAACCTTTCCGTGCTTAACCTGAAGAACAATAAGCTTAATGGCCAAATACCACCAACAATAGGGAACATCTCAAGCATTAGCCAACTTGATTTCTCTGGAAACAAATTAGTTGGAGGAATTCCAGATTCCCTAACCAAACTGGCAAATCTCAGTTCATTCAACGTCTCTTTCAACAACCTATCTGGTCCTGTCCCATCGTTACTTTCCAAAAGATTCAATGCTAGCTCTTTTGTAGGGAATCTTGAGCTATGTGGGTACATCAGTTCAAAACCATGCCCTTCACCCCCTCCTCATAATCTTCCAGCTCAATCACCACAGCCTCCTTCTAAGCCACATCATCGCAAATTAAGCACCAAGGACATCATCCTCATAGTGGCAGGTGTTCTTCTGTTGATTCTGTTATTACTGTGCTGCTTTTTGCTCTGTTGTTTGATCAGGAGAAGAGCTGCTTCAAGCAGAAAGAGTGGCAAGGCTGCAAAGGCTGCAGCATCTGCTAGGAGTGTTGAGAAAGGTGCTTCAGCTGGTGGTGAGGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACGCTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAGACTACTAAAGGGCAGAAGGAGTTTGAAACCGAGGTTGCTGCACTTGGAAAAATCAGACACCCAAATCTCTTAGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACAAAAGGAAGCCTAGCATCATTCCTTCACGCTCGTGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAATGATTGGAGTCACTAGGGGCTTGAGCTACCTCCATAGCCAAGAAAACATTGTACACGGGAACCTTACATCAAGCAACATACTATTGGATGAGCAAACAGAAGCCCACATAACAGATTTCGGTCTCTCAAGGCTGATGACAACTTCTGCCAACACCAACATCATTGCCACTGCAGGAAGTCTTGGCTACAATGCACCAGAGCTTTCAAAGACCAAGAAGCCTAACACAAAAACTGATGTCTACAGCCTTGGTGTCATCATGTTGGAACTCCTAACTGGAAAGCCACCTGGGGAGCCAACCAATGGCATGGACTTGCCCCAATGGGTGGCTTCCATAGTGAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTCATGAGGGATGCACCAGCCATAGGAGATGAATTGCTTAACACCTTGAAGTTAGCACTGCATTGTGTGGATCCATCTCCTGCTGCTAGGCCTGAAGTTCACCAGGTTCTACAGCAATTGGAGGAGATCAAACCAGAGTTGGCTGCAGGGGATGATGGAGCTACTAAGGTCCAAACAACTGAGTAA 2568 0.4467 MGHNSCHVKDFYTDPFQISLSFASYGGRRRRLGNNHKGGGGFISLVFFLFLLQALASAIQPVSGSLWDGVVVTQADFQALRAIKNELIDLKGVLRSWNDSGVGACSGGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQSLRKLSLHDNALAGPVPLSLGLLPNLRGVYLFNNKLSGSIPPSLGNCPMLQSLDISNNSLSGNIPPSLARSTRIYRINLSFNSLSGSIPSSLTMSPSLTVLALQHNNLSGSIPDSWGGAGKKKASQLQVLTLDHNFISGTIPVSLGKLALLENVSLSHNQIVGPIPSELGALSRLRILDLSNNAINGSLPTSFSNLSSLVSLNLESNQLANRIPDSLDRLHNLSVLNLKNNKLNGQIPPTIGNISSISQLDFSGNKLVGGIPDSLTKLANLSSFNVSFNNLSGPVPSLLSKRFNASSFVGNLELCGYISSKPCPSPPPHNLPAQSPQPPSKPHHRKLSTKDIILIVAGVLLLILLLLCCFLLCCLIRRRAASSRKSGKAAKAAASARSVEKGASAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIMIGVTRGLSYLHSQENIVHGNLTSSNILLDEQTEAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIMLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVHQVLQQLEEIKPELAAGDDGATKVQTTE 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01033 855 FunFam Pollen receptor-like kinase 1 643 847 - -
Spst4g01033 855 Gene3D Transferase(Phosphotransferase) domain 1 644 850 - -
Spst4g01033 855 ProSiteProfiles Protein kinase domain profile. 566 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01033 855 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 74 227 - -
Spst4g01033 855 Gene3D Phosphorylase Kinase; domain 1 572 643 - -
Spst4g01033 855 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 258 457 - -
Spst4g01033 855 SUPERFAMILY Protein kinase-like (PK-like) 570 838 IPR011009 -
Spst4g01033 855 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 266 837 - -
Spst4g01033 855 SMART LRR_typ_2 361 385 IPR003591 -
Spst4g01033 855 SMART LRR_typ_2 337 360 IPR003591 -
Spst4g01033 855 SMART LRR_typ_2 140 163 IPR003591 -
Spst4g01033 855 SMART LRR_typ_2 164 188 IPR003591 -
Spst4g01033 855 SMART LRR_typ_2 409 432 IPR003591 -
Spst4g01033 855 SMART LRR_typ_2 313 336 IPR003591 -
Spst4g01033 855 Gene3D Ribonuclease Inhibitor 330 455 IPR032675 -
Spst4g01033 855 PRINTS Leucine-rich repeat signature 191 204 - -
Spst4g01033 855 PRINTS Leucine-rich repeat signature 313 326 - -
Spst4g01033 855 FunFam Leucine-rich repeat receptor-like protein kinase 552 642 - -
Spst4g01033 855 Pfam Protein tyrosine and serine/threonine kinase 570 834 IPR001245 GO:0004672|GO:0006468
Spst4g01033 855 Pfam Leucine rich repeat N-terminal domain 75 114 IPR013210 -
Spst4g01033 855 Pfam Leucine rich repeat 312 350 IPR001611 GO:0005515
Spst4g01033 855 Gene3D Ribonuclease Inhibitor 232 329 IPR032675 -
Spst4g01033 855 Pfam Leucine Rich Repeat 191 209 IPR001611 GO:0005515
Spst4g01033 855 SUPERFAMILY L domain-like 113 448 - -
Spst4g01033 855 Gene3D Ribonuclease Inhibitor 73 231 IPR032675 -
Spst4g01033 855 CDD STKc_IRAK 572 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01033 Spst-Chr4 42348350 42351428 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01033 67 839 Receptor kinase-like Gene Family AT3G51740 70.566 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst4g01033 PK_Tyr_Ser-Thr 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01033 - - gmx:100799290 1399.42