Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01031 ATGAAACATTCTCTGTTTCTCTTTCTCGTTCTCATTTTCCACGTTTTGTTTACTTTCATTCCCGCGCTTTCCCTCTCATCCGACGGCCTCGCGCTTCTCGCTCTCAAGTCCGCCGTCGACCAGCCCTCCGCCGCCTTCTCCGACTGGAACGACGGCGATGTGACGCCTTGCGCCTGGTCGGGAATCGTCTGCGCCAACATCTCCGGCGAAGAGGACCCCCGCGTGGTCGGGATCTCCCTCGCCGGAAAATCCCTCTCCGGCTACCTCCCATCGGAGCTCGGCACGCTGCGCTTCCTTCGGCGACTCAATCTCCACGACAACGCCTTCTCCGGCGTCCTCCCGGCGCAGCTCTCCAACGCCTCCGCGCTCCACAGCCTCTTCCTCCACCACAACAATCTCTCCGGTGCTATTCCCCGCTCCCTATGCACTCTCCCGCGCCTCCAAAACCTCGACCTCTCTGAAAACGCCTTCTCCGGCCACATCCCCGACCACATCGGAAACTGCAAGAACCTACAGCGTCTCATTCTTGCCGGGAACAGCTTCTCCGGCGAGATTCCAGCCGGCGTGTGGCCGGACTTGCAGAACCTCCTCCAACTCGACCTCTCCGCGAACGAGTTAACCGGTTCAATCCCTGACCAAATCGGAACACTAGTTTCCCTCTCCGGTACTCTGAACCTCTCCTTCAATCATCTCTCCGGTAAGCTTCCGGCGTCGCTAGGAAAATTACCGGCGACGGTGAGCTTTGATTTCAAAAACAACAACCTCAGCGGCGAAATTCCCCAAACGGGGTCGTTTTCAAACCAAGGCCCTACCGCATTCCTTGAAAATCCTAACCTATGCGGGTTTCCCCTTAGAAAATCATGTTCCGGTTCTGACCGGGATTTTTCTCCAGGGTCGGACCAAAACAAACCGGTTAACCGGTCTAAGGGGTTGACCCCCGGTTTAATTATTTTAATCTCTGCAGCTGATGCTGTTGTTGTGGCCTTAATTGGGCTTGTGATTGTTTATGTTTATTGGAAGAAAAAAGATGACGAGAACGCGTGTAGTTGCATTAGGAGGAGAAAGTTTGGTGAAGCGAAAGGGAGTGTGTGTGTGTGTGGTGGATTCCCATGTGTTAGTGGGGAGAAAAGTGATGATGATGATGACGACGAAGAGTATGAGGTGGAGGGGGGTGAGGGTGAGGGTGAAGGGGAATTGGTGAGGATTGATAAGGGATTGAGTTTCGAACTTGATGAGTTGTTGAGGGCTTCTGCATATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGTTGGGGAATGGGGTGCCTGTGGCTGTCAGGAGGTTGGGGGAGGGAGGGGAACAGAGGTATAAGGAGTTTGCTGCAGAGGTTATGGCCATTGGGAAGGTCAAGCACCCCAATGTTGTGAGGTTGAGGGCTTACTATTGGGCACAAGATGAGAAGCTTCTCATCAGTGATTTCGTCTCCAATGGCAATCTGACCCATGCCCTTCGAGGGAGAAATGGCCAACCAACTACAAATCTTTCATGGTCCATAAGGCTGAAAATAGCCAAAGGAACAGCCAGGGGCTTAGCCTATCTCCACGAATGCAGTCCAAGAAAATTCGTCCATGGTGACATCAAACCCTCCAACATCCTACTTGACAATGACTTCCAACCCTACATTTCCGATTTTGGCCTTAACCGTCTTATCAGCATTACCGGAAACAACCCCTCCACCGGTGGGTTCATGGGTGGAGCTCTTCCTTACACGAAGTCATCACAGAAAGAGAGAACCAACAATTACAAAGCCCCTGAGGCTCGTGTCCCTGGCTGCATACCCACCCAGAAATGGGACGTGTACTCATTTGGGGTTGTGTTGCTTGAAATACTAACTGGTAGGTCACCAGAATCCTCTCCCACCACATCAACTTCCATGGAAGTTCCTGACTTGGTAAGGTGGGTGAGGAAAGGGTTCGATCAAGAAAGCCCATTATCTGAAATGGTTGATCCATCGCTTCTCCAAGAAGTGCGTGTTAAGAAAGAGGTGCTGGCTGTGTTTCATATTGCTTTGGGTTGCACTGAGGGAGACCCTGAGGCTCGACCAAGGATGAAAACTGTCTCTGAAAACCTTGATAAGATTGGAACGTAA 2139 0.5199 MKHSLFLFLVLIFHVLFTFIPALSLSSDGLALLALKSAVDQPSAAFSDWNDGDVTPCAWSGIVCANISGEEDPRVVGISLAGKSLSGYLPSELGTLRFLRRLNLHDNAFSGVLPAQLSNASALHSLFLHHNNLSGAIPRSLCTLPRLQNLDLSENAFSGHIPDHIGNCKNLQRLILAGNSFSGEIPAGVWPDLQNLLQLDLSANELTGSIPDQIGTLVSLSGTLNLSFNHLSGKLPASLGKLPATVSFDFKNNNLSGEIPQTGSFSNQGPTAFLENPNLCGFPLRKSCSGSDRDFSPGSDQNKPVNRSKGLTPGLIILISAADAVVVALIGLVIVYVYWKKKDDENACSCIRRRKFGEAKGSVCVCGGFPCVSGEKSDDDDDDEEYEVEGGEGEGEGELVRIDKGLSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVMAIGKVKHPNVVRLRAYYWAQDEKLLISDFVSNGNLTHALRGRNGQPTTNLSWSIRLKIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFQPYISDFGLNRLISITGNNPSTGGFMGGALPYTKSSQKERTNNYKAPEARVPGCIPTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHIALGCTEGDPEARPRMKTVSENLDKIGT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01031 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Spst4g01031 712 FunFam Leucine-rich repeat receptor-like protein kinase 195 290 - -
Spst4g01031 712 CDD STKc_IRAK 421 710 - -
Spst4g01031 712 SMART serkin_6 419 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01031 712 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 191 - -
Spst4g01031 712 Pfam Leucine rich repeat 99 156 IPR001611 GO:0005515
Spst4g01031 712 MobiDBLite consensus disorder prediction 376 393 - -
Spst4g01031 712 Gene3D Ribonuclease Inhibitor 25 189 IPR032675 -
Spst4g01031 712 FunFam Os07g0541700 protein 493 581 - -
Spst4g01031 712 Pfam DNA binding protein S1FA 307 342 IPR006779 GO:0003677|GO:0005634|GO:0006355
Spst4g01031 712 SMART LRR_typ_2 193 217 IPR003591 -
Spst4g01031 712 SMART LRR_typ_2 96 119 IPR003591 -
Spst4g01031 712 SMART LRR_typ_2 144 168 IPR003591 -
Spst4g01031 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 165 710 IPR046959 -
Spst4g01031 712 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Spst4g01031 712 Gene3D Phosphorylase Kinase; domain 1 407 490 - -
Spst4g01031 712 SUPERFAMILY L domain-like 26 285 - -
Spst4g01031 712 SUPERFAMILY Protein kinase-like (PK-like) 420 706 IPR011009 -
Spst4g01031 712 Pfam Protein kinase domain 420 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01031 712 Gene3D Transferase(Phosphotransferase) domain 1 491 712 - -
Spst4g01031 712 MobiDBLite consensus disorder prediction 375 394 - -
Spst4g01031 712 ProSiteProfiles Protein kinase domain profile. 415 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01031 712 FunFam Leucine-rich repeat receptor-like protein kinase 398 490 - -
Spst4g01031 712 Gene3D Ribonuclease Inhibitor 190 290 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01031 Spst-Chr4 42334973 42338596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01031 21 710 Receptor kinase-like Gene Family AT1G67510 67.511 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst4g01031 Pkinase 8.1e-32 CL0016
TF S1Fa-like Spst4g01031 Pkinase 8.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01031 - - var:108346287 1276.15