Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01023 ATGGCTTCCATCAACTTCAACCCCTTCGGGGGAAACTGGTTCTCCAAACCTCCCAACCCTCTCTCTATCCCCTCTCTCCCCAACAACTCTCTCAACCTCCCAGACGCACCCTCCCTCCACCCCAACTTCGCCGCTATCACCCTCCCCAACCCCTTCCGCCGCAAGCGCAAGGAAAAGCCCAAGGACCCCGCCGAGCCCGACCCTTACGAGCAGCTGGCCCGGCAGGTCCTATGGGAGGCTCAGACCCTTCCGGACCACCGCCACACCCCAGAAGTCGACAAAATCCTCGCCGACAACGATGACGATTCTATCTTCGAGAGACGCGAGAATGCGACAGAGGAGGAGATTCGGGAGAACGAGGAGCTCGTGGAGACCCTGCGCAGCAGCCCGGTGGTGCAGTTCCTGGCGCGCGCCGAGGAGATTCTCGACAAGATGAACGAGATGGAGTTGAAGGAGAACGAGAAACCCTACCACAGGGAGGATTGGGATTTGTGGAAGCAGTTGCCGCATGTTATTGGACCCGACGGACGTCCCATGCCCCGCAAGGCCCAGACGACCCAGGAGGAGGCCGACGACAAGTTTTGGGACTTCGCCAGGCAGTTCTTTTTCGGGCTCTGGAACTTCAGACAGCGGCCCTACCCTCCCGAGAAGCCCATCGATGCGGCCCAGTCCATTGGGTATAAGAACCTCGAGAGGCGCTACTATGACTTTATCATGAGGAGTGGTGGATGGTACTATAAGGATCGGCTGGGTCGCACCCGAGGACCTTTAGAGTTGATTACTCTTAAAAGTGCATGGAGTGCTGGGATTATTGATAAGAACACGTTCATTTGGGGAGAGGATATGGATGAATGGGCACCCATTCACATGATTTATGGAATGGAGCGTGCAATTGCCACTTGGGAAGTTAGACTTGCTGCATCAGCAACAGCATTGATTCACAAACTACAAAAAGGTATACCACCGTGGGTTCCTTTGAAGGGATTTGAAAAGAAGTCATATAAGCAACTTCAAGAAGAGGCAATAGAAAGCAAGAGACGTGATTTAGCAGTATTGGAAGCTAATGATGGTATTTGGCCTGGAGTTAAAATTCCAAGTTATGCCCTATTTCTTTGGGCTAGTGGCTCTGAACTGACCACTATATTGGAACAGGATCACATGCCCAACAAATACATTCCCAGACATGTTAGAAAGAGGTTGGCTGAAATTATTCCAGGGTTGAGGCCATGGGAAGTTCTGAGCATAGAACAAGCAATGGATCAAATAACATTTAACGGAGAATGGTTCCGTGAGCCTCTTGGTTCCTACACCACTGGTCCCCCCTACCTCCAGCACTGGAATGAAGATGTTATGGAGTTGTACAAGATATTTGAAGATCTTAACACTGAGCTGTTCGAATATATGGAGCATTCAATTGCTGGCTTTGATAAAATCATGGAGAAGGTGAGGGATGATTTTATAGCGAGAACTGATAAACTGTTGGAGGAGAAAGACAAAGAGAAGAGAGAAGAACGCAAGAAAGCTGGGTTACCCGAGTATTTGTGGCCTGAAAAACCGAATAAACCTAACCAACTTATTCTCACAGGAGCTGAAGCCACCATCATGGCTAGAGGGCTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTTGACAAGCTTGGTGGTGCCTTTGCACCCAAGCCATCATCTGGACCCCACAAGTCAAGGGAGTGTCTGCCTTTGATTCTCATCTTGAGGAACAGACTAAAATATGCCCTGACATATAGAGAAGTTATTGCTATCTTGATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATATCCTACTGGTTTCATGGATGTTGTTTCTATTCCCAAAACAAACGAAAGTTTCCGTCTTCTGTATGACACAAAGGGTCGCTTCCGTCTCCACTCCGTGAGGGATGAGGAGTCAAAGTTTAAGCTCTGTAAGGTTCGGTCTGTTCAATTTGGGCAAAAGGGCATACCCTATTTGAACACATACGACGGTCGCACCATCCGCTATCCTGACCCACTAATCAAGGCTAATGACACCATCAAACTAGACCTGGAAAACAACAAGATCGCTGATTTCATCAAATTTGATGTGGGGAATGTGGTCATGGTTACCGGTGGAAGGAACAGAGGCCGGGTCGGCGTCATCAAGAGCAGGGAAAAGCACAAGGGAAGCTTTGAGACCATCCATGTTCAGGATGCAACTGGTCATGAATTTGCAACTCGCATGGGTAATGTCTTCATTATTGGCAGAGGGACTAAGCCTTGGGTTTCTCTTCCCAAAGGGCGTGGAATCAAGTTGTCTATTATTGAGGAGGCTAGAAAGAGGCTTGCTACTCAACATGAAACTGTTGCCTAA 2397 0.4898 MASINFNPFGGNWFSKPPNPLSIPSLPNNSLNLPDAPSLHPNFAAITLPNPFRRKRKEKPKDPAEPDPYEQLARQVLWEAQTLPDHRHTPEVDKILADNDDDSIFERRENATEEEIRENEELVETLRSSPVVQFLARAEEILDKMNEMELKENEKPYHREDWDLWKQLPHVIGPDGRPMPRKAQTTQEEADDKFWDFARQFFFGLWNFRQRPYPPEKPIDAAQSIGYKNLERRYYDFIMRSGGWYYKDRLGRTRGPLELITLKSAWSAGIIDKNTFIWGEDMDEWAPIHMIYGMERAIATWEVRLAASATALIHKLQKGIPPWVPLKGFEKKSYKQLQEEAIESKRRDLAVLEANDGIWPGVKIPSYALFLWASGSELTTILEQDHMPNKYIPRHVRKRLAEIIPGLRPWEVLSIEQAMDQITFNGEWFREPLGSYTTGPPYLQHWNEDVMELYKIFEDLNTELFEYMEHSIAGFDKIMEKVRDDFIARTDKLLEEKDKEKREERKKAGLPEYLWPEKPNKPNQLILTGAEATIMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPTGFMDVVSIPKTNESFRLLYDTKGRFRLHSVRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKIADFIKFDVGNVVMVTGGRNRGRVGVIKSREKHKGSFETIHVQDATGHEFATRMGNVFIIGRGTKPWVSLPKGRGIKLSIIEEARKRLATQHETVA 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01023 798 Coils Coil 487 507 - -
Spst4g01023 798 FunFam 40S ribosomal protein S4 709 779 - -
Spst4g01023 798 SMART kow_9 708 735 IPR005824 -
Spst4g01023 798 Gene3D - 709 779 IPR014722 -
Spst4g01023 798 Coils Coil 335 355 - -
Spst4g01023 798 FunFam 40S ribosomal protein S4 656 706 - -
Spst4g01023 798 Pfam RS4NT (NUC023) domain 537 573 IPR013843 -
Spst4g01023 798 CDD KOW_RPS4 709 763 IPR041982 -
Spst4g01023 798 MobiDBLite consensus disorder prediction 46 69 - -
Spst4g01023 798 Pfam Ribosomal family S4e 629 703 IPR013845 -
Spst4g01023 798 PANTHER PROTEIN TIC 56, CHLOROPLASTIC 1 510 IPR037471 -
Spst4g01023 798 FunFam 40S ribosomal protein S4 535 651 - -
Spst4g01023 798 Hamap 30S ribosomal protein S4e [rps4e]. 541 772 IPR000876 GO:0003735|GO:0005840|GO:0006412
Spst4g01023 798 Pfam 40S ribosomal protein S4 C-terminus 746 792 IPR032277 -
Spst4g01023 798 MobiDBLite consensus disorder prediction 1 27 - -
Spst4g01023 798 Pfam KOW motif 711 744 IPR005824 -
Spst4g01023 798 Gene3D - 656 706 IPR038237 -
Spst4g01023 798 ProSitePatterns Ribosomal protein S4e signature. 542 556 IPR018199 -
Spst4g01023 798 Pfam GYF domain 2 244 290 IPR025640 -
Spst4g01023 798 MobiDBLite consensus disorder prediction 51 68 - -
Spst4g01023 798 SMART s4_6 576 640 IPR002942 GO:0003723
Spst4g01023 798 Gene3D - 535 651 IPR036986 GO:0003723
Spst4g01023 798 CDD S4 585 646 - -
Spst4g01023 798 ProSiteProfiles S4 RNA-binding domain profile. 576 635 - -
Spst4g01023 798 Pfam S4 domain 581 624 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01023 Spst-Chr4 42209773 42217654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01023 535 794 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.000 9.73e-175 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01023 - - gmx:100801248 883.634