LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g01020	ATGGCTCCTCCCAAGACTCTCTTTGTCCTCCTCATCTTCCTCATTCTTCTAGTTTCTGCCACTGCTTTTTCCTTCCTATTCCATGGCTTCAATGAAAGTAATATCACCCTTGAAGGGAAAGCAAAGATTGACAACCAAGGTATACTTCAGCTCACCGGAAGAAAAAACAATATTGTTGGTCATGCATTCTATAACAAATCCATCATAATACTTGATAAAACAAATGCTTCAGTCCTCCAGCCAAAGGTTTTTTCCTTTAGTACATGCTTTGTTTTCTCAATTGTGTCACCAAGTTCTGGCCCTGGTGGCTTTGGTCTTGCCTTCACCATAGCTCCTTCAACACAATTCCCAGATGCTGAAGGTGGCCATCTTCTTGGTCTTTTCAACTCTTCCAATGATATGAGCTCCTCAAATCATATCTTGGTGGTTGAGTTTGATACAGTGAATGGCTACAAAGATTCTGCTGACACCGTAGGAAACCATGTTGGGGTAAACAAAAATGGCATGTCCTCAAATATATCTGAGCCTGCAGCTTACTTTGAAGAGGGCAGAAAGGAAGAGTTCAACATGGAGAAGGCTGACGCTGTTTGTGCTTGGATTGAATACGATGGTGAAACAGAAATACTGAATGTCACAATAGCCCCTTATTTGGAACCAAAACCAAGCAAACCACTTATATCCGAGGCTATTGACATCAAGTCTGTCATGGAGGAAAGCATGTTTTTTGGTTTCTCTGCATCAACAGGTAGTAGGAAAGCAAGTTCCCATTATATTCTAGGGTGGAGCTTTGCATTGAATGGGGTTTCCCCTCCACTCAATGCTTCACTCCTTCCAAAGCCACCACCAAAGGAGAAAGATTCATACTATTTTCCTTTGGTCAAGGTTGTAATTGGTATCTTGTCTGCTTTGACATTTACCTTGCTGTGCCTTTTGTTTTGTGTGACATTCTATAAGAGATATATGATATTTGAAACTCTTGAGGACTGGGAGCGGGGTTGTCCTCATAGGTTAAAATATAGAGATCTTCATCTAGCAACAAAGGGATTCGTAGAGAGCCAACTAATTGGTGTTGGAGGCTTTGGTTCTGTGTACAAAGGTGTGTTACCAAGCACAGGAACTGAGGTTGCTGTTAAAAGGATCATGACAAGTCCAGCCCGAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGACACAAGAATTTGGTCAATCTTCAAGGGTGGTGCAAGCACAAGAATGATCTCCTTCTAATTTATGATTACATTCCGAATGGGAGCCTTGACTCTCTCCTATTCAATAAAAACTTTGCTTTGGATTGGGACCAGAGATTCAAAATTCTCAAAGGTGTAGCTGAAGGGCTGTTGTACCTTCATGAAGAGTGGGAACAAGTGGTGATCCATAGAGATGTGAAATCTAGCAATATTCTTATTGACGGGGACTTCAATGCTCGTTTGGGTGACTTTGGACTAGCAAGGCTTTATAGCCATGACCAAGTGTCACACACAACCAGTGTGGCTGGCACCATAGGGTATATTGCACCAGAGTTAACTAGGACAGGAAAGGCATCTACAAGCTCTGATGTGTATGCATTTGGGGTCCTACTTCTTGAAACGGTTTCTGGCACAAGGCCTGTAGGTTCATCAGGTAAGTTTTTCTTGGTCGATTGGGTTCTTGAAAATTGCCTACTTGATCAGATTCTTGAAGTGGTTGATCCAAAGCTAGATTCAGTTTATGATGAAGAAGAAGTGGAGTTAGTTCTGAAATTGGGTCTACTATGCAGTCAATACAAAGCTGATTACAGACCCTCTATCAAACAAGTGACTAGGTACCTAAACATTGATGACCCTCTGCCTGATATCTCTGATTGGAGACACTATGATTCACAAAGCACCACAACAAGCTTAAGTTTCTTGGAAGCCATGCCTACTAGTAAAACTTCATCCTCATACAGTTTACCCACTAGGAGTACAATGTCCATAGAAACTGGTAGATCGTAA	2010	0.4174	MAPPKTLFVLLIFLILLVSATAFSFLFHGFNESNITLEGKAKIDNQGILQLTGRKNNIVGHAFYNKSIIILDKTNASVLQPKVFSFSTCFVFSIVSPSSGPGGFGLAFTIAPSTQFPDAEGGHLLGLFNSSNDMSSSNHILVVEFDTVNGYKDSADTVGNHVGVNKNGMSSNISEPAAYFEEGRKEEFNMEKADAVCAWIEYDGETEILNVTIAPYLEPKPSKPLISEAIDIKSVMEESMFFGFSASTGSRKASSHYILGWSFALNGVSPPLNASLLPKPPPKEKDSYYFPLVKVVIGILSALTFTLLCLLFCVTFYKRYMIFETLEDWERGCPHRLKYRDLHLATKGFVESQLIGVGGFGSVYKGVLPSTGTEVAVKRIMTSPARGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDSLLFNKNFALDWDQRFKILKGVAEGLLYLHEEWEQVVIHRDVKSSNILIDGDFNARLGDFGLARLYSHDQVSHTTSVAGTIGYIAPELTRTGKASTSSDVYAFGVLLLETVSGTRPVGSSGKFFLVDWVLENCLLDQILEVVDPKLDSVYDEEEVELVLKLGLLCSQYKADYRPSIKQVTRYLNIDDPLPDISDWRHYDSQSTTTSLSFLEAMPTSKTSSSYSLPTRSTMSIETGRS	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g01020	669	Gene3D	-	20	270	-	-
	Spst4g01020	669	Pfam	Legume lectin domain	24	276	IPR001220	GO:0030246
	Spst4g01020	669	Gene3D	Phosphorylase Kinase; domain 1	321	425	-	-
	Spst4g01020	669	SUPERFAMILY	Concanavalin A-like lectins/glucanases	20	282	IPR013320	-
	Spst4g01020	669	ProSitePatterns	Protein kinases ATP-binding region signature.	355	378	IPR017441	GO:0005524
	Spst4g01020	669	ProSiteProfiles	Protein kinase domain profile.	349	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g01020	669	SMART	serkin_6	349	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g01020	669	Gene3D	Transferase(Phosphotransferase) domain 1	426	620	-	-
	Spst4g01020	669	CDD	lectin_legume_LecRK_Arcelin_ConA	23	267	IPR001220	GO:0030246
	Spst4g01020	669	PANTHER	-	20	617	-	-
	Spst4g01020	669	Pfam	Protein kinase domain	350	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g01020	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Spst4g01020	669	FunFam	L-type lectin-domain containing receptor kinase V.9	22	268	-	-
	Spst4g01020	669	MobiDBLite	consensus disorder prediction	648	669	-	-
	Spst4g01020	669	FunFam	receptor-like protein kinase FERONIA	319	425	-	-
	Spst4g01020	669	FunFam	L-type lectin-domain containing receptor kinase S.4	426	628	-	-
	Spst4g01020	669	CDD	STKc_IRAK	355	616	-	-
	Spst4g01020	669	SUPERFAMILY	Protein kinase-like (PK-like)	334	627	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst4g01020	Spst-Chr4	42192125	42194134	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst4g01020	16	632	Receptor kinase-like Gene Family	AT3G08870	52.690	0.0	614

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Spst4g01020		Pkinase	4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g01020	-		-	vra:106770487	1138.64