Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01003 ATGGATTACACTCACCCTACTTCATCTGCAGGATCTTCTTCAAAGACAAAGGGAAGCAAGGAGAAAAAGGGTGCCAAGAAATGCAAAGGAGTGAGGCTCTCCACCGACCCTCAAAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACCGGTTCAAGATCTTGCAGAGCATGGTTCCAGGTGGAAGCAAGATGGACACAGTGTCCATGTTGGAGGAAGCCATTCAGTATGTGAAGTACCTCAAAGCCCAGATTTGGCTCCACCAAACCATGATCAATTTCTTAGATGATAACGAGTCACTCTTCCCTATGTACCTCAGTGATTGCTACTTCCCTTCTGAACAGTTCATTCCCCCTCAGCAAAATCCACCACTTGATCATGATAACATGCAGAATTTACCTCATCTGCCACAAGCACAATGCAGCTTCCAAGGTGAAGACGCAACATACTTTGATGCCTCTTTGAAATATTGGCCAGCTTAA 486 0.4609 MDYTHPTSSAGSSSKTKGSKEKKGAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKAQIWLHQTMINFLDDNESLFPMYLSDCYFPSEQFIPPQQNPPLDHDNMQNLPHLPQAQCSFQGEDATYFDASLKYWPA 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01003 161 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Spst4g01003 161 SMART finulus 39 88 IPR011598 GO:0046983
Spst4g01003 161 MobiDBLite consensus disorder prediction 1 15 - -
Spst4g01003 161 Pfam Helix-loop-helix DNA-binding domain 43 83 IPR011598 GO:0046983
Spst4g01003 161 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 95 IPR036638 GO:0046983
Spst4g01003 161 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 154 IPR045843 GO:0003700|GO:0006355
Spst4g01003 161 CDD bHLH_AtIND_like 34 93 - -
Spst4g01003 161 Gene3D - 37 91 IPR036638 GO:0046983
Spst4g01003 161 MobiDBLite consensus disorder prediction 1 40 - -
Spst4g01003 161 FunFam Transcription factor LAX PANICLE 36 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01003 Spst-Chr4 41899204 41899689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01003 27 106 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.000 3.86e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g01003 HLH 9.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01003 - - pvu:PHAVU_010G073400g 248.054