Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00999 ATGTCAGTTTTGATAGCAGCGGAGACTTCATCCATTACACAATCCCAGTCCCTAAGTTACAGACAGACCATAGTTTCCCCACGTGGAATCTTTGAACTCGGTTTCTTCAACCTTCGAAATCCCAACAAAATCTACCTCGGGATTTGGTACAAGAATATCCCACTTCAAAACATAGTTTGGGTTGCAAATGGTGGCACCCCAATCAGGGACTCTTCTGCCATCTTGAAACTAAACAGTTCTGGTAATTTGGTCCTCACACACAACAACACGGTTGTTTGGTGCACAATTTCTTCAGAAAAGACACAGAATCCAGTGGCAGAGCTTTTGGATTCTGGCAATCTTGTGATAAGAGATGAGAATGAAGCAAAGGCAGAGGCATATCTGTGGCAAAGCTTTGATTATCCATCTAATACAATGCTGCCAGGAATGAAGGTTGGATGGGACCTCAAAAGAAATCTTAGTACTTTCCTGATAGCTTGGAAGAGTGATGATGATCCCACCCCAGGAGACTTATCTTGGGGCATTACCCTGCACCCTTATCCTGAGATCTATATGATGAAGGGAACAGAAAAGTACCATAGAGTTGGACCATGGAATGGTTTGCGTTTCAGTGGAAGGCCACTTATGACGCTTAATGACCCCATTTACCGTTATGAGTTTGTCTCCAACCAGGAAGAGATTTATTACAGATGGAGCCTTAAGCAAACTAGTTTAGTAACAAAAGTGGAACTTAACCAAAGTGCACAAGAAAGTCAACGTTATTTATGGTCAGGGAAATCATGGACTTTGTATTCAACAATGCCAGAAGACTACTGTGATCATTATGGAGTTTGTGGAGCCAATACATATTGCACCACTTCTGCATCACCAATCTGTGAATGTTTAAAAGGGTTCACGCCTAAGTCTCCCGCAAAATGGAACTCAATGGAATGGTCCGAAGGGTGTGTCCTCAAAAATCCAATTAGATGCAAAGACAAGCTGGGTGATGGTTTTGTCTCCATGGATGGCTTGAAAGTGCCGGATACAAATTATACGTATGTGGATGAGACTATTGATCTTAAGCAATGCAGAACCAAGTGCTTGAATAGTTGCTCCTGCATGGCATATACCAATTCAAATATAAGTGGTGCAGGCAGTGGCTGTGTCATGTGGTATGGTGATTTATTTGACATCAAACTGTATTCAAATCCAGAAAATGGGCAGCGTCTATATATAAGGTTGAATTCTTCAGAATTAGACGTGAAAGGGTCTATCGGGCACAAGAAGAACTCTAAACTAATATTTGTAACCTCCATTGCTGCAATTTTCGGAGTGATGCTTGCTATCTATTTTGTCTACAGAAGGAACACTATAGAGAAGTCAAAGACAAAAGAGAAAATTGAAAGACAGCTAGATGTTCTGGATGTGCCATTGTTTGATCTTGTATCAATCACAACCGCCACTAATAATTTCTCATTGAATAATAAGATTGGCCAAGGTGGCTTTGGACCTGTATATAAGGGAAAATTTGTGGATGGTCGAGAAATTGCTGTCAAGAGACTTTCAAGCAGCTCTGGACAAGGAATAACTGAGTTCATAACTGAAGTGAGTTTGATTGCAAAGCTTCAACACCGAAATCTTGTAAAGCTCCTTGGTTGTTGCTTTCGAGGAAAAGAAAAGTTACTAGTATATGAGTACATGGTTAATGGCAGCCTGGACAAATTCATTTTTGGTATGTAA 1719 0.4072 MSVLIAAETSSITQSQSLSYRQTIVSPRGIFELGFFNLRNPNKIYLGIWYKNIPLQNIVWVANGGTPIRDSSAILKLNSSGNLVLTHNNTVVWCTISSEKTQNPVAELLDSGNLVIRDENEAKAEAYLWQSFDYPSNTMLPGMKVGWDLKRNLSTFLIAWKSDDDPTPGDLSWGITLHPYPEIYMMKGTEKYHRVGPWNGLRFSGRPLMTLNDPIYRYEFVSNQEEIYYRWSLKQTSLVTKVELNQSAQESQRYLWSGKSWTLYSTMPEDYCDHYGVCGANTYCTTSASPICECLKGFTPKSPAKWNSMEWSEGCVLKNPIRCKDKLGDGFVSMDGLKVPDTNYTYVDETIDLKQCRTKCLNSCSCMAYTNSNISGAGSGCVMWYGDLFDIKLYSNPENGQRLYIRLNSSELDVKGSIGHKKNSKLIFVTSIAAIFGVMLAIYFVYRRNTIEKSKTKEKIERQLDVLDVPLFDLVSITTATNNFSLNNKIGQGGFGPVYKGKFVDGREIAVKRLSSSSGQGITEFITEVSLIAKLQHRNLVKLLGCCFRGKEKLLVYEYMVNGSLDKFIFGM 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00999 572 CDD PAN_AP_plant 320 407 - -
Spst4g00999 572 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 447 559 - -
Spst4g00999 572 Pfam D-mannose binding lectin 58 161 IPR001480 -
Spst4g00999 572 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 569 - -
Spst4g00999 572 SMART ntp_6 326 407 IPR003609 -
Spst4g00999 572 SMART blect_4 15 135 IPR001480 -
Spst4g00999 572 Pfam Protein tyrosine and serine/threonine kinase 485 569 IPR001245 GO:0004672|GO:0006468
Spst4g00999 572 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 166 IPR036426 -
Spst4g00999 572 Gene3D - 3 132 IPR036426 -
Spst4g00999 572 ProSiteProfiles PAN/Apple domain profile. 323 408 IPR003609 -
Spst4g00999 572 SUPERFAMILY Protein kinase-like (PK-like) 463 571 IPR011009 -
Spst4g00999 572 ProSiteProfiles Bulb-type lectin domain profile. 9 129 IPR001480 -
Spst4g00999 572 Pfam PAN-like domain 325 391 IPR003609 -
Spst4g00999 572 ProSiteProfiles Protein kinase domain profile. 484 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00999 572 Pfam S-locus glycoprotein domain 194 302 IPR000858 GO:0048544
Spst4g00999 572 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 5 132 - -
Spst4g00999 572 CDD B_lectin 15 135 IPR001480 -
Spst4g00999 572 Gene3D Phosphorylase Kinase; domain 1 445 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00999 Spst-Chr4 41846968 41850274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00999 388 570 Receptor kinase-like Gene Family AT4G21230 44.809 1.89e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst4g00999 S_locus_glycop 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00999 - - gmx:100808227 942.954