Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00981 ATGCAGAACGAGGAAGGACAGATCACTGAGCTCTACATTCCTAGGAAGTGCTCTGCTACAAATAGATTGATCACTGCGAAAGACCATGCTTCTGTTCAAATTAACATTGGGCATGTGGATGAGAATGGTATTTACAATGGGCAATTCTCCACTTTTGCCCTCTGTGGCTTCATCCGTGCTCAGGGTGATGCTGATAGTGCCCTAGATCGCCTGTGGCAGAAGAAGAAAGTTGAAGTTAAGCAACAATAG 249 0.4498 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVKQQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00981 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Spst4g00981 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Spst4g00981 82 FunFam 40S ribosomal protein S21 1 81 - -
Spst4g00981 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Spst4g00981 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Spst4g00981 82 Gene3D - 1 81 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00981 Spst-Chr4 41550332 41551579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00981 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.185 1.36e-52 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00981 K02971 - gmx:100817753 167.162