Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00969 ATGGCTTCGACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCCAGAAGAATCGCCATCGTTCGTGCTCTCTCTCAAGATGTCGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAGACTTGGGAGGTGACTTTGCCAGCGGAAGAAGTACCGCCTGAGCTTCCAGAGCCTGCGCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGCTTGATCAATGAGCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAGGGGCAGCACGAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTCGCAGATGAAGGTTATGAAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAGTTTTGGATTGGCTGTGATATATGTGAGAGATGGTTCCATGGTAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGTATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGCAGACCCTAA 714 0.479 MASTPRTVEEIFKDYTARRIAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00969 237 SUPERFAMILY FYVE/PHD zinc finger 172 235 IPR011011 -
Spst4g00969 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Spst4g00969 237 CDD PHD_AL_plant 183 233 IPR044104 -
Spst4g00969 237 PANTHER CPG BINDING PROTEIN 4 236 IPR045104 GO:0006355|GO:0042393
Spst4g00969 237 MobiDBLite consensus disorder prediction 135 175 - -
Spst4g00969 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Spst4g00969 237 Pfam PHD-finger 184 231 IPR019787 -
Spst4g00969 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Spst4g00969 237 MobiDBLite consensus disorder prediction 146 163 - -
Spst4g00969 237 SMART PHD_3 183 231 IPR001965 -
Spst4g00969 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Spst4g00969 237 FunFam PHD finger alfin-like protein 176 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00969 Spst-Chr4 40812795 40815446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00969 2 236 Alfin-like Transcription Factor Family AT5G05610 77.542 8.93e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Spst4g00969 Alfin 2.4e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00969 K26274 - gmx:100779170 467.233