Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00953 ATGGAGCAAAAAGGAGCTGTGCTTATGCAACGATATGAGCTAGGGAGATTATTAGGCCAAGGAACCTTTGCAAAGGTTTACCATGCTAGGAACCTCATAACTGGCATTAGCGTGGCCATAAAAATTGTTGATAAAGAGAAGATTTTGAAAGTTGGGATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTCGTTGAGCTTTATGAGGTAATGGCTAGCAAAACCAAAATTTACTTTGTCATGGAGTATATAAAAGGCGGTGAGCTCTTTGACAAGGTATCCAAAGGAAAGCTCAAGCAGGATGATGCTAGGAGATATTTTCAGCAGTTGATCAGTGCTGTTGACTACTGCCATAGCAGAGGTGTGTGCCATCGTGATCTGAAACCAGAAAATCTTCTACTGGATGAAGATGGGAATTTGAAGGTCTCAGATTTCGGGTTAAGTGCACTTGCCGAAACTAAGCACCAAGATGGATTACTCCATACCACTTGTGGTACCCCTGCTTATGTTGCTCCAGAAGTGATAAACAGAAGGGGCTATGATGGAGCCAAAGCTGACATATGGTCATGTGGGGTGATCTTGTATGTTCTATTAGCTGGTTTTCTTCCATTTAGAGATTCAAATCTGATGGAGATGTACAGGAAGATTGGCAAGGGAGAATTCAAATTTCCTAACTGGTTTGCACCAGATGTGCGCAGATTGTTGTCGAGAATCTTGGATCCAAACCCAAAGACCAGGATATCAATGGCCAAACTTATGGAAAGTTCTTGGTTCAGAAAGGGGTTACAGAAGCCCACCATTACTCAGAACAAATGTGAAGAACTGGCTCCTCTGGATGCAGATGGAGTATTTGGTGCTTGTGAGAATGGAGATTCTATCGAGCCAGCAAAAGACTCAAAACCTTGTAATCTAAATGCTTTTGACATCATCTCCTATTCCTCTGGTTTTGACTTGTCTGGTTTGTTTGAGGAAACTGATAGAAAAAAAGAAGCACGATTTACATCTGACAAGCCGGCCTCTATTATCATCTCCAAATTGGAAGAAATTTGCAAGCGCCTTCGGTTGAAAGTGAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAAGGAAGGCAGGAAAGGGCCTTTGGGTATTGATGCTGAGATATTTGAGATCACCCCAGTTTTCCATCTTGTGGAGTTAAAAAAGTCTAGTGGAGACACATTGGAGTACCAAAATCTTTTGAAACAGGAGGTAAGGCCTGCACTTAAGGACATTGTTTGGAACTGGCAAGGAGAACAGCCACAACAACTGCAACATGGAGTAGTGCAGAAAGAAGAACAACCTTCATATCCTGGCATATCTGAGATTGTACCACATCCAACTGCGTAG 1401 0.4218 MEQKGAVLMQRYELGRLLGQGTFAKVYHARNLITGISVAIKIVDKEKILKVGMIDQIKREISVMRLIRHPHVVELYEVMASKTKIYFVMEYIKGGELFDKVSKGKLKQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDEDGNLKVSDFGLSALAETKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILYVLLAGFLPFRDSNLMEMYRKIGKGEFKFPNWFAPDVRRLLSRILDPNPKTRISMAKLMESSWFRKGLQKPTITQNKCEELAPLDADGVFGACENGDSIEPAKDSKPCNLNAFDIISYSSGFDLSGLFEETDRKKEARFTSDKPASIIISKLEEICKRLRLKVKKKDGGLFKLEGSKEGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQNLLKQEVRPALKDIVWNWQGEQPQQLQHGVVQKEEQPSYPGISEIVPHPTA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00953 466 FunFam Non-specific serine/threonine protein kinase 2 287 - -
Spst4g00953 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Spst4g00953 466 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Spst4g00953 466 CDD STKc_SnRK3 11 265 - -
Spst4g00953 466 FunFam Non-specific serine/threonine protein kinase 307 431 - -
Spst4g00953 466 Gene3D Kinase associated domain 1, KA1 307 432 - -
Spst4g00953 466 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00953 466 CDD CIPK_C 313 427 - -
Spst4g00953 466 SUPERFAMILY Protein kinase-like (PK-like) 8 277 IPR011009 -
Spst4g00953 466 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00953 466 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Spst4g00953 466 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00953 466 Pfam NAF domain 309 367 IPR004041 GO:0007165
Spst4g00953 466 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Spst4g00953 466 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 427 - -
Spst4g00953 466 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00953 Spst-Chr4 39723996 39725396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00953 1 439 CBL-interacting serine-threonine protein kinases AT5G58380 65.859 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Spst4g00953 Pkinase 4.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00953 K07198 - gmx:100815651 896.345