Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00947 ATGGCGATTTCTCCTGAAACGTTCACAACCCGAAAACGACGACCCGGGGCGTCGTTTAACACTTCCAAGCTGAACGACTTTAACCTTCTCTTCTCTCTGCTTCAACTAACGGATCAGATATGTTCTTTAAACCTTAACAACGCCGCCAACTTTCTCCTGAACCGCGCTTCCTGTTCCACCATCCGCAAAACGCAGCTCCTCGGTGTCGTCTTCGAGGACCTAATTTGGTGTTCCAATGCCAATCCCGATTCCGTTGTGTTCCCCCACTCTCTCTTCCTTTGCCTCGAGGAAATGTACATCGTTCTACACAAAATCAAAACTTTGATTGAAGATTTCTCCAACGGAAGCAAGTTCAATTTGCTCATGCAAATCGAAACCGTCGCCGACACCTTCCACAGGCTCACTGCAGAACTCTCCACGCTCCTCGACGTTTTCCCTCTCCAGGAGCTCAACCTAACCGACGACGTTCGGGACCTTGTTATCCTCATCAGAAAGCAGTGCTCCGAATCCAGGCCGTTCATCGGAACAGAACAGATTAACCTCCGGTACGACGTCGTTTCCGTCCTCGACCGGATCAAGAACGAGATCGTTCCTGATCAGGCGCATCTTTCGTCGATTTTCGAGAAACTGGAGATTCGCGACGCGTCGAGCTGCAGAGCGGAGATTGAGAACTTGGAGGAGGAGATTCACAACCGGAGCGAGGAGCAAGCGAAGACGGATCTCGTAGCGTTGATAGGCCTTGTTCGTTTCGCCAAGTGCGTTCTCTTCGGCGCGTCAACGCCGTCGACGAGAAGCGTCACTCTGCGGCGGAATCAGTCGTCGGAGTTCGCAGTTCCGTCGGATTACCGGTGTCCAATAAGCCTAGAGCTCATGCGCGACCCTGTCGTGGTGGCGACGGGACAGACGTACGATCGTGGATCGATCAAGCTGTGGATGGATTCAGGACACAACACGTGTCCAAAAACGGGTCAAACACTATCACACACCGACCTAATCCCCAATCGCGCGCTGAGGAACATGATAGCGACGTGGTGCCGCGAGCAGAAAATCCCCTTCGAAGCGGAAACGATTACAGGGAAACTAAATGGCGGAGTAACCAATAAGGCCGCGTTAGAAGCCACGCGAATGACTGTGTCGTTTTTGGTGAACAAGCTCAAGTCAAACGACAACGTCCCTTTGTCCGTTGAAGATACAAACGGCGCCGTTTACGAGCTTCGGGTTTTGGCGAAAACAGATTCGGATAGCCGAGCCTGTATAGCCGAAGTAGGGGCCATTCCGCTTTTGGTTCGGTTTCTCGACGTGGGAATGGAAAACCCGAGCCTACAGGTTAACGCCGTGACGACGATTTTGAACTTGTCTATTCTGGAAGCGAACAAGACGCGGATAATGGAGACTGACGGCGCATTAAACGGCGTTGCGGAGGTTTTACTTTCGGGTGCCACGTGGGAGGCCAAGGCCAACGCGGCGGCGACGGTGTTTAGTTTATCGAGTGTGCCTGCGCACAGGAAGAGACTGGGAAGGAAAACGCGTCTCGTGAGCGGGTTAGTGGGTTTGGCGCGTAATGGGCCCGAGGGAGCGAGGCGGGACGCGCTGGCGGCTATACTCAACCTCGCTGCGGACAGGGAGACGGTAGCGCGTCTGGTGGAGGGAGGAGCGGTGGACATGGCGGCGGAGGTCATGGCGGCGATGCCCGAGGAGGGGGTGACGATTCTGGAGGCGGTGGTCAAGAGGGGTGGGCTGATGGCGGTGGCGGCGGCGTACGCCGGAATTAAGAGGCTGGGGGCGGTTCTCAGGGAGGGGTCGGAGAGAGCAAGGGAGAGTGCGGCGGCGACGCTGGTCACCATGTGTCGGAAAGGGGGGTCGGAGGTTGTGGCGGAGCTGGCGGCGATTCCCAGCGTGGAGAGGGTCATTTGGGAGCTCATGGCCGTAGGGAGTGTCAGGGGGCGGCGGAAGGCGGCTACGCTGTTGAGGATTTTGAGGCGGTGGGCGGCGGGGCTGGATGGCGGAGAGAGTGAAGGGTTCTCGACAACCACTGTGGTTGATCCAACTTCCACCATTTCCTTACCACAGTAA 2073 0.5605 MAISPETFTTRKRRPGASFNTSKLNDFNLLFSLLQLTDQICSLNLNNAANFLLNRASCSTIRKTQLLGVVFEDLIWCSNANPDSVVFPHSLFLCLEEMYIVLHKIKTLIEDFSNGSKFNLLMQIETVADTFHRLTAELSTLLDVFPLQELNLTDDVRDLVILIRKQCSESRPFIGTEQINLRYDVVSVLDRIKNEIVPDQAHLSSIFEKLEIRDASSCRAEIENLEEEIHNRSEEQAKTDLVALIGLVRFAKCVLFGASTPSTRSVTLRRNQSSEFAVPSDYRCPISLELMRDPVVVATGQTYDRGSIKLWMDSGHNTCPKTGQTLSHTDLIPNRALRNMIATWCREQKIPFEAETITGKLNGGVTNKAALEATRMTVSFLVNKLKSNDNVPLSVEDTNGAVYELRVLAKTDSDSRACIAEVGAIPLLVRFLDVGMENPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLLSGATWEAKANAAATVFSLSSVPAHRKRLGRKTRLVSGLVGLARNGPEGARRDALAAILNLAADRETVARLVEGGAVDMAAEVMAAMPEEGVTILEAVVKRGGLMAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAIPSVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGESEGFSTTTVVDPTSTISLPQ 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00947 690 SUPERFAMILY ARM repeat 377 659 IPR016024 -
Spst4g00947 690 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Spst4g00947 690 Pfam U-box domain 278 349 IPR003613 GO:0004842|GO:0016567
Spst4g00947 690 Gene3D - 372 663 IPR011989 -
Spst4g00947 690 SUPERFAMILY RING/U-box 273 351 - -
Spst4g00947 690 SMART arm_5 412 454 IPR000225 GO:0005515
Spst4g00947 690 Coils Coil 215 235 - -
Spst4g00947 690 CDD RING-Ubox_PUB 279 331 IPR045210 -
Spst4g00947 690 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Spst4g00947 690 FunFam RING-type E3 ubiquitin transferase 364 554 - -
Spst4g00947 690 PANTHER U BOX DOMAIN-CONTAINING 86 660 - -
Spst4g00947 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 356 IPR013083 -
Spst4g00947 690 Pfam Armadillo/beta-catenin-like repeat 413 453 IPR000225 GO:0005515
Spst4g00947 690 FunFam RING-type E3 ubiquitin transferase 273 351 - -
Spst4g00947 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 467 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00947 Spst-Chr4 39481571 39483643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00947 11 685 U-box Gene Family AT5G01830 55.425 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00947 - - gmx:100805405 1077.77