Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00946 ATGGGGAATCACAGGTTTAGGTTATCAGATATGATTCCAAATGCTTGGTTTTACAAGCTGAGGGACATGGGGAGAGGAAGAAAGCAAAACACCACACCCTCCGGGAAGAAGAAGCAACCTTCACCCACTTCAACCACACATTCATCAAAACCAACCCAACCCCACCACCAATACAACAACAACAACAACAACAACAACCCCAGAAAGTCCTACTACATCACAAGAGACCTCAAAACCTCACCCTCAAACACCCCAAAATTTTCCCCTCCCAGAAAATCAACGAAACAGAGAACCAAAAGAGGAGCCCCAAGAACCCCAAAACTTGTCTCCTCAGGTTGTAGCTGTCGCACCACCCTCGAATCCATGTGGACTAAATCAGATTCACCACAAGAACACTCTTCCTCATCCCCATTTGACTCCTCACCCGAGTCAGAGTCCCCAGAATTCAGAACAGACCGTGCTCTCCCATGTTCTTCCTCATTCGATGAAATGGTTTCCATGTCCACCACCTCTTGCGCCTCTTGCAGGCTTAACACAAACAAAAGCAACCCCACCAACGACATCATCATCGACGTCGACAAAAGCTCCATAGCAAGAAAGGATAACAAGCTTGATGGCTACTACAATCACAACAACAACGACTATGATGACACCTTCTCAGAACTTGAGCTTACTCCGATCATAACCAAGCCACCAAAGTTGTTAAAGAAGAGAGAACTCAAACAAGGGTCGTTGAAGGTGAGAATTGTGAAAGACGAGTCCGCAATGAAGGAACAGAGGAACAATGGTTCTGTGAGGAGGTTCTCTGTGAGTTCTCCGGGGGTGAGGTTGAGGGTCCACTCGCCCAAAATCGCCGGCTGGAAGGGGCGGAAAAGTGTCTCATCGACGGCTAGTTCTGGCTCCCGGAGAAACCTCTCCGATAGCTTTGCGGTGGTGAAGTCTTCCTTTGACCCGCAGAAAGATTTCAGGGAGTCCATGGTGGAGATGATTGTGGAGAACAACATAAGGGCATCCAAGGACTTGGAGGATCTACTCGCTTGCTACCTTTCTCTCAATTCCGATCAGTATCATGACCTCATCATCAAAGTCTTCAAGCAAATTTGGTTTGATTTGACTCAATCAAGGTAA 1128 0.4725 MGNHRFRLSDMIPNAWFYKLRDMGRGRKQNTTPSGKKKQPSPTSTTHSSKPTQPHHQYNNNNNNNNPRKSYYITRDLKTSPSNTPKFSPPRKSTKQRTKRGAPRTPKLVSSGCSCRTTLESMWTKSDSPQEHSSSSPFDSSPESESPEFRTDRALPCSSSFDEMVSMSTTSCASCRLNTNKSNPTNDIIIDVDKSSIARKDNKLDGYYNHNNNDYDDTFSELELTPIITKPPKLLKKRELKQGSLKVRIVKDESAMKEQRNNGSVRRFSVSSPGVRLRVHSPKIAGWKGRKSVSSTASSGSRRNLSDSFAVVKSSFDPQKDFRESMVEMIVENNIRASKDLEDLLACYLSLNSDQYHDLIIKVFKQIWFDLTQSR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00946 375 ProSiteProfiles OVATE domain profile. 311 370 IPR006458 -
Spst4g00946 375 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 70 373 IPR038933 GO:0045892
Spst4g00946 375 MobiDBLite consensus disorder prediction 110 144 - -
Spst4g00946 375 MobiDBLite consensus disorder prediction 27 91 - -
Spst4g00946 375 NCBIfam uncharacterized plant-specific domain TIGR01568 309 372 IPR006458 -
Spst4g00946 375 Pfam Transcriptional repressor, ovate 315 371 IPR006458 -
Spst4g00946 375 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Spst4g00946 375 MobiDBLite consensus disorder prediction 22 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00946 Spst-Chr4 39470376 39471503 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Spst4g00946 Ovate 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00946 - - gmx:100785362 515.383