Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00932 ATGGCGCCGAAGAAGCCTAGAACCGGGACGAGGAACCCTGAACTGGTTAGGGGTATAGGGAAGTACTCCAGGTCGCAGATGTACCACAAGAGAGGCATCTGGGCCATTAAGGCGAAAAACGGTGGGGTTTTCCCTCGTGACGACCCTAAGCCTAAGCCCGAGGCCCCTGCTCAAAAGCGCGATGTCAGGAAGCCCGCTACACTCAGGGCTAGCCTTACTCCCGGTACAGTGTTGATTCTTTTGGCGGGTAGATTCAAAGGAAAGAGGATAGTGTTTTTGAAGCAGCTTTTTTCTGGATTGCTTCTTGTTACCGGTCCTTTTAAGATTAATGGAGTTCCATTGAGACGTGTCAACCAGTCCTATGTTATTGCCACTACAACCAAAGTAGATGTTTCTGCTGTTAATGTGGACAAATTTGATGATAAATACTTTTCAAAAGAGTCCCAGAAAAAGAAAAACAAGGGAGAGGACGAGTTTTTCATTGAGGCAGAGAAGAAAAAACGTGCCTTGCCCCAGGAGAAAATAGATGACCAAAAGAATGTCGACTCGGCGTTGATAAAATCCATTGAGAGTATTCCAGACTTAAATACTTACCTGGGTGCCAGGTTTTTTCTAAAGGCTGGTATGAAGCCTCATGAGCTAGTCTTCTAG 651 0.4593 MAPKKPRTGTRNPELVRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRDDPKPKPEAPAQKRDVRKPATLRASLTPGTVLILLAGRFKGKRIVFLKQLFSGLLLVTGPFKINGVPLRRVNQSYVIATTTKVDVSAVNVDKFDDKYFSKESQKKKNKGEDEFFIEAEKKKRALPQEKIDDQKNVDSALIKSIESIPDLNTYLGARFFLKAGMKPHELVF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00932 216 Pfam Ribosomal protein L6, N-terminal domain 4 59 IPR005568 GO:0003735|GO:0005840|GO:0006412
Spst4g00932 216 MobiDBLite consensus disorder prediction 43 64 - -
Spst4g00932 216 FunFam 60S ribosomal protein L6 70 154 - -
Spst4g00932 216 PANTHER 60S RIBOSOMAL PROTEIN L6 1 216 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst4g00932 216 MobiDBLite consensus disorder prediction 40 64 - -
Spst4g00932 216 CDD KOW_RPL6 64 216 IPR041997 -
Spst4g00932 216 Gene3D - 70 154 IPR014722 -
Spst4g00932 216 SUPERFAMILY Translation proteins SH3-like domain 70 156 IPR008991 -
Spst4g00932 216 Pfam Ribosomal protein L6e 109 216 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00932 Spst-Chr4 38852444 38853570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00932 3 216 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 67.672 1.44e-99 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00932 K02934 - gmx:100784101 347.821