Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00931 ATGCTTACTAAGCTTTATGCTTGGTTTGTGTTGGAGGAGGAAGCAGTAATTAGGGTTTGTGTTGGAGGAGGAGCAGCAATTAGGGCTTGTGTTGGAGGAGGAAGCAATGGCGCCCAAGTAGGGAACTCGTACGGGTTGAGAAACCCGGAGTTGATAAAGGGCATTGGAAAATACTCGAGATCGCAGATGTACCACAAGAGGGGTATTTGGTCTATCAAGGCGAAAAACGGCGGCGTATTCCCTCGTCACGATCCTACACTGAGACCTGAAACTCCCGCTCAAAAGCCTCCAAAATTTTATCCTGCGGATGATGTTAAGAAACCTCTTTTCAACAAGATCAAGCCCAAACTCACTAAGCTTAGTGTTACTCCTGGGACAGTCTTGATTCTTCTCGCCGGAAGATTCAAGGGAAAGAGAATAGTGTTTTTGAAGCAGCTTCCTTCTTGTAACCGTGTTGTAAATGTTGCCTCTTCCGTATTTCCTGTGTTTACTTATTTTTTCAATTCGGAATATTGTCCTTTCAAGATTAATGGAGTTCCATTGAGACGTGTCAGCCAGTCCTATGTTATTGCCACGTCAACCAAAGTAGATGTTTCTACGGTTAACATGGACAAATTTGATGACAAATACTTCTCAAAGGAGTCCCCGAAAAAGAAAAACAAGGGAGAGGGCGAGTTTTTCATTGAGACAGAGAAGGAAAGACGTGTCTTGCCCCAGGAGAAAAAAGATGACCAAAAAAATGTCGACTCTGCGTTGATAAAATCCATTGAGAGTATTCCTGACTTAAATACTTATCTGGGTGTCAGGTTTTCCTAA 816 0.4301 MLTKLYAWFVLEEEAVIRVCVGGGAAIRACVGGGSNGAQVGNSYGLRNPELIKGIGKYSRSQMYHKRGIWSIKAKNGGVFPRHDPTLRPETPAQKPPKFYPADDVKKPLFNKIKPKLTKLSVTPGTVLILLAGRFKGKRIVFLKQLPSCNRVVNVASSVFPVFTYFFNSEYCPFKINGVPLRRVSQSYVIATSTKVDVSTVNMDKFDDKYFSKESPKKKNKGEGEFFIETEKERRVLPQEKKDDQKNVDSALIKSIESIPDLNTYLGVRFS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00931 271 SUPERFAMILY Translation proteins SH3-like domain 122 223 IPR008991 -
Spst4g00931 271 Pfam Ribosomal protein L6, N-terminal domain 45 93 IPR005568 GO:0003735|GO:0005840|GO:0006412
Spst4g00931 271 CDD KOW_RPL6 114 271 IPR041997 -
Spst4g00931 271 Pfam Ribosomal protein L6e 176 271 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst4g00931 271 ProSitePatterns Ribosomal protein L6e signature. 177 195 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst4g00931 271 PANTHER 60S RIBOSOMAL PROTEIN L6 173 271 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00931 Spst-Chr4 38837109 38839141 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00931 47 271 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 64.317 6.46e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00931 K02934 - gmx:100499766 320.472