Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00929 ATGATTGTTGGGTTATATTGTAGAGTTTACTTTGACATTGCCTTTTGTCTAGCTCATGTTTGCCATTTAGGTCCTTTCAAGATTAATGGAGTTCCATTGAGACGTGTCAACCAGTCCTATGTTATTGCCACATCAACCAAAGTAGATGTTTTTACTGTTAACATGGACAAATTTGATGACAAATACTTTCCAAAGGAGTCCCAGAAAAAGAAGAAGAAAGGAGAGGGCGAGTCTTTCATCGAGACAGAGAAGAAAGCGAAGAAAGAGGACCAGAAAAATGTGGACTCTGCGTTGATAAAAACCATTGAGAGCATTCCTGACTTGAATGCTTATCTGGGTGCCAGCAAGATTGATTCTACGTTATACAAGTAG 372 0.3898 MIVGLYCRVYFDIAFCLAHVCHLGPFKINGVPLRRVNQSYVIATSTKVDVFTVNMDKFDDKYFPKESQKKKKKGEGESFIETEKKAKKEDQKNVDSALIKTIESIPDLNAYLGASKIDSTLYK 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00929 123 Pfam Ribosomal protein L6e 28 114 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst4g00929 123 SUPERFAMILY Translation proteins SH3-like domain 23 74 IPR008991 -
Spst4g00929 123 ProSitePatterns Ribosomal protein L6e signature. 29 47 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst4g00929 123 PANTHER 60S RIBOSOMAL PROTEIN L6 24 115 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00929 Spst-Chr4 38806551 38808233 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00929 8 114 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 57.522 3.92e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00929 K02934 - han:110917938 118.242