Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00927 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCTACTTTGACGACGATTCGGTGGCGCAAAGGCTGGCCCCTGCGATCCGGCGAATTCGCCGATCTTTGCGATAACTGCGGTTCTGCTTATGAGCAATTAACATACTGTGATATTTTCCACTCAAATGATTCTGGTTGGAGAGAATGCACTTCATGTGACAAGCGTCTTCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGATGTACTGCAAGCAATGAAAAGCCTAATGGATCCGTGACATCAAAGGTAATAAATGTCAGTGCACAGCAGTGCACTGCTCTGGCTAACCAATTAAATCTGAGGAGTATGCAAGTAGGGCATTTTGCAGAGAATGATGGCCTCCGATGCTGGTTCAAACCTCCTAATGTTGAAACAGATGGGCCTTCTACAGAAATAAAACCAGAAATTTTGCCTTCTGTCGAAGAACTTGGAAGCACTTTGATATCACAATTTCATTATGAGTCTAATGGATCATCCAAGGCTTCCAAAGCAGAGAGTTGTAAGACAAACACAGAAATGCGAGATATATATTTAAGTATGACCCTTGCTACTCCTTTAGGAAACTCAAACCCTTTTCATAGTTCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTCCACTTTTATTGGGGTCGAGGTCTCGCCATCTTTTACCTAAGCCCCCTAGGTCAACTATTGGCACAGGCTTAGAAGTAAATGCTGGCATGGTATCCCAGATTCGTGTAGCAAGGCCACCTGCTGAAGGACGCGGAAGGAATCAGTTGCTTCCACGTTATTGGCCTAGGATTACTGATCAAGAATTGCAACAAATATCAGGAGAGTATCCAACATTTTCAAATTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCCTGGTTTTACCAAAAGCATGTGCCGAAGCATATTTCCCTCCAATCTCTCAACCTGAGGGCCTTCCCTTACGAATTCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGCGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACCGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAGTTCTACAGCAGTACAGGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATCCGCTGTCTAAAAAATGGAACTCTGCTGGTGGTGACATGAATTGGCATAACATTGACATGCCAGAAAGCAGGAAAAGAGAGGGGTTGCCTTTGCCACCTGTGCTGGTTCCTGATAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACCTGGGAAGAGGCTCAGGATTTGCTCCGACCTCCTCCTACTGTTAAGCCAAGCATTGTCATGATTGAGGATCACGTTTTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAGCTGGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAATTGGATAATCTCCTGAGGCTGAATAAAGAATTCAAGAAACAAAGATTGACAGCAAGTCAGAGACCAGCCCTGGAACATGAATCTTCGGGACTGGATGCTTTGGCAAATGCAGCAATACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTTACCACCACAAAACATCCCCGGCATAGACCTGGGTGTTCCTGCATTGTCTGTATTCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACTTGCACCTGCAATGTGTGCATGACAGTAAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGCCAATCCGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCATGGCGGACCAAGGACGAATCAGAAGTAGACAGTACCTCACGACATTTAACTCCAGCTGATGGTTTGGAGAATGAAGTAAGGGCGCCAAATGAGTTGGACTCAAGGAGTGAAGACCATGTGGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCTGACCGGGAGGAAGCGCAAGCTGGGCCAAATAATGTGAGCATGACAAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGTTTGATATCAGAGCAGGAAACAAATTTAGCTTCAAATGTACAGGCACAGACAACGAATGAGAGTGAGGGAAGACACAATGAGGATTGCGGTACTGCTTCAGTTATTCATGAGCAGGATAGCAGTCCCGAAGAGAACAGTGGGCAAGATAAAGACCAAAACAATTCACACTCGTGA 2574 0.4441 MESRSCMNVACATLTTIRWRKGWPLRSGEFADLCDNCGSAYEQLTYCDIFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCIRCTASNEKPNGSVTSKVINVSAQQCTALANQLNLRSMQVGHFAENDGLRCWFKPPNVETDGPSTEIKPEILPSVEELGSTLISQFHYESNGSSKASKAESCKTNTEMRDIYLSMTLATPLGNSNPFHSSVVDEREQSKTSPLLLGSRSRHLLPKPPRSTIGTGLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGEYPTFSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATSSTAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNPLSKKWNSAGGDMNWHNIDMPESRKREGLPLPPVLVPDKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSAGCSCAAPNELNPRELDNLLRLNKEFKKQRLTASQRPALEHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRHLTPADGLENEVRAPNELDSRSEDHVAEAAKGQLDLNCQPDREEAQAGPNNVSMTSLLEEANLPLETYLKQNGLTSLISEQETNLASNVQAQTTNESEGRHNEDCGTASVIHEQDSSPEENSGQDKDQNNSHS 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00927 857 MobiDBLite consensus disorder prediction 709 723 - -
Spst4g00927 857 MobiDBLite consensus disorder prediction 812 857 - -
Spst4g00927 857 Gene3D - 284 414 IPR015300 -
Spst4g00927 857 ProSiteProfiles B3 DNA-binding domain profile. 310 411 IPR003340 GO:0003677
Spst4g00927 857 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 811 - -
Spst4g00927 857 SMART B3_2 310 410 IPR003340 GO:0003677
Spst4g00927 857 FunFam B3 domain-containing transcription repressor VAL1 284 415 - -
Spst4g00927 857 Pfam B3 DNA binding domain 310 409 IPR003340 GO:0003677
Spst4g00927 857 CDD B3_DNA 308 409 IPR003340 GO:0003677
Spst4g00927 857 MobiDBLite consensus disorder prediction 690 752 - -
Spst4g00927 857 MobiDBLite consensus disorder prediction 842 857 - -
Spst4g00927 857 SUPERFAMILY DNA-binding pseudobarrel domain 307 410 IPR015300 -
Spst4g00927 857 MobiDBLite consensus disorder prediction 736 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00927 Spst-Chr4 38769972 38777119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00927 1 808 B3 DNA Binding Superfamily AT4G32010 47.093 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst4g00927 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00927 K09287 - gmx:100778833 1556.58