Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00923 ATGTTCAAGGCTGGTCTAGAAGACCCAAAAGGCAAACTCTCTACGTGGAATGAAGATGATTATAGTCCCTGCAACTGGGTTGGTGTCAAATGTGACCCTGCAAACAATAGGGTATCTTCTCTTGTTCTTGATGGATTCTCTCTTTCTGGTCACATTGATAGAGGCCTTTTGAGACTGCAGTTCCTTCAGATTCTGTCCCTTTCTAGGAACAAATTCAGAGGGACCATAGCTCCTGACCTTCTTAGCATTGGTGATTTACAAGTTGTTGATTTGAGTGAGAACAACCTTTCTGGGGTAATTCCAGATGAGATTTTCCAGCAATGTTGGTCTTTGAGAGTGGTATCATTTGCCAACAACAACCTCACAGGTAAGATTCCTGATTCTTTGAGCTCCTGCTACTCTTTGGCAGTTTTGAACTTTTCCTCTAATCAGCTTCATGGAGAACTGCCATCTGGAATGTGGTTTTTAAGGGGACTACAGTCAATTGATCTTTCGAACAACTTGCTTGAAGGAGAGATTCCAGAAGGAATTCAGAATCTGATTGATTTGAGGGAGTTGAGGCTGGGGAGGAACCTCTTCACTGGTAGGATTCCTGAGCATATTGGTGACTGCTTGCTTCTGAAGTTGGTTGATTTCAGTGGTAATTCTCTCTCTGGGAGACTTCCGGAGTCAATGCAAAAACTCACCTCGTGCACATTCCTCAGCTTGCAAGGGAATTCATTCACAGGTGGAATTCCACATTGGATTGGAGAAATGAGAAGTATAGATGTATTGGATCTTTCTGCAAATAGATTTTCTGGTTGGATTCCAAAGTCAATAGGAAATCTTGACTTGTTGAGTAGGTTGAATCTTTCAAGGAATCAGATCACAGGAAACCTGCCAGAGTTGATGGTAAACTGCATTAAGCTTTTGACTCTTGACATCAGCCACAATCACTTGGCAGGCCATCTTCCTCCATGGATATTTAGGATGGGTTTACAAAGTATATCTCTTTCTGGGAATACCTTTAGTGAGAGAAATTATCCCTCACTTACTTCCATTCCTGTATCTTTTCATGGCCTTCAGGTTTTGGATTTGTCATCAAATGCATTCTTTGGCCAAATTCCATCTGGAATTGGAGGTCTTGATAGCTTGCAAGTCTTGAATTTATCCACCAACAATATCTCAGGTTCTATTCCTTTGAGTATTGGAGAACTTAAGTCTTTGTACATTCTTGACTTGAGTGAGAACAAGCTTAATGGAAGCATTCCTTCAGAAATAGAAGGGGCAATTTCACTCAGTGAAATGAGGCTACAAAAGAACTTCTTAGGTGGGAGAATTCCGGCCCAAATTGAGAAGTGTTCAGAACTAACATTTCTTCTACAATTTCTTCTGATCATTTTCTCTTCCTGCATTTCATTGGAATGGTACAGGAATCTATCTCACAACAAGCTTATTGGCTCAATCCCTTCAGCCATAGCAAACCTAACCAAGCTTCAGAATGTAGATTTCTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTGACAAATATTTCCAACCTTTTCTCGTTTAATGTTTCATATAACCACCTTCAAGGTGAGCTACCGGTGGGTGGCTTCTTCAATACCATCTCTCCTTCATCTGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAATCAATCGTGCCCTTCTGTTCATCCAAAGCCTATTGTCCTAAACCCCAATTCTTCTTACTCCAATGCTGGCTCTTCCTTGCAAAACCACCACCATAAGATTATGCTCAGTATCTCTGTCCTTATTGCTATTGGAGCTGCTATTTTTATTGTCATTGGTGTGGCGGTTGTCACTGTCCTAAATATTCATGCGAGGTCTTCAATATCTCTTTCTGCTAATCCATTTATATTCTCTGGGGGTGAGGACTATAGCGGTTCACCCGGGAATGATCCGAACTATGGCAAGCTTGTGATGTTTTCTGGTGATGCTGAATTTGCCGATGGTACTCATAATCTTCTTAACAAAGAGAGTGAAATTGGTCGCGGTGGATTTGGAGTTGTTTATTGCACTTGTCTTAGAGATGGTCATTATGTTGCAATCAAGAAGCTTACAGTGTCCACCTTAACCAAGTCTCAAGAAGACTTTGAGAGGGAGGTTAAAATGCTTGGGAAGATCAAGCATCAAAATCTTGTGGCACTTGAAGGTTACTATTGGACTCCATCCTTGCAGCTCCTAATTTATGAGTACCTAGCCAGAGGGAGTTTGCAAAAGCTTCTACATGATGATGATAGTAGCACAAATATACTTTCTTGGAGAAAAAGGTTCAAGATCATTCTTGGAATTGCAAAAGGGTTGGCCTATTTGCATCAAATGGAGTTAATTCATTACAATTTGAAGTCAACCAATGTCTTCATAGATTGTTCTGATGAGCCAAAGATTGGAGATTTTGGCTTGGTGAGGCTACTGCCAATGCTAGACCATTGTGTGTTGAGCAGCAAACTTCAAAGCGCACTTGGATACATGGCTCCTGAGTTTGCTTGCCGCACAGTCAAGATAACTGATAAGTGTGACATATATAGCTTTGGAATTTTGATTTTAGAGGTGGTGACAGGAAAAAGACCAGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACAAGGTGAGGAGTGCATTGGATGATGGCAAAGTGGAGCAATGTGTTGATGAAAAGCTTAAGGGTAATTTTGCTGTAGAGGAAGCAGTTCCTGTGATAAAACTGGGGTTGGTTTGTGCATCACAAGTGCCCTCAAACCGTCCAGATATGGCTGAGGTAATCAACATTCTGGAGTTGATCCAATGTCCTTCAGAAGGACATGAGGAAATACAATGA 2859 0.4124 MFKAGLEDPKGKLSTWNEDDYSPCNWVGVKCDPANNRVSSLVLDGFSLSGHIDRGLLRLQFLQILSLSRNKFRGTIAPDLLSIGDLQVVDLSENNLSGVIPDEIFQQCWSLRVVSFANNNLTGKIPDSLSSCYSLAVLNFSSNQLHGELPSGMWFLRGLQSIDLSNNLLEGEIPEGIQNLIDLRELRLGRNLFTGRIPEHIGDCLLLKLVDFSGNSLSGRLPESMQKLTSCTFLSLQGNSFTGGIPHWIGEMRSIDVLDLSANRFSGWIPKSIGNLDLLSRLNLSRNQITGNLPELMVNCIKLLTLDISHNHLAGHLPPWIFRMGLQSISLSGNTFSERNYPSLTSIPVSFHGLQVLDLSSNAFFGQIPSGIGGLDSLQVLNLSTNNISGSIPLSIGELKSLYILDLSENKLNGSIPSEIEGAISLSEMRLQKNFLGGRIPAQIEKCSELTFLLQFLLIIFSSCISLEWYRNLSHNKLIGSIPSAIANLTKLQNVDFSWNELSGSLPKELTNISNLFSFNVSYNHLQGELPVGGFFNTISPSSVSGNPLLCGSVVNQSCPSVHPKPIVLNPNSSYSNAGSSLQNHHHKIMLSISVLIAIGAAIFIVIGVAVVTVLNIHARSSISLSANPFIFSGGEDYSGSPGNDPNYGKLVMFSGDAEFADGTHNLLNKESEIGRGGFGVVYCTCLRDGHYVAIKKLTVSTLTKSQEDFEREVKMLGKIKHQNLVALEGYYWTPSLQLLIYEYLARGSLQKLLHDDDSSTNILSWRKRFKIILGIAKGLAYLHQMELIHYNLKSTNVFIDCSDEPKIGDFGLVRLLPMLDHCVLSSKLQSALGYMAPEFACRTVKITDKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRSALDDGKVEQCVDEKLKGNFAVEEAVPVIKLGLVCASQVPSNRPDMAEVINILELIQCPSEGHEEIQ 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00923 952 Gene3D Ribonuclease Inhibitor 458 562 IPR032675 -
Spst4g00923 952 Gene3D Ribonuclease Inhibitor 252 455 IPR032675 -
Spst4g00923 952 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 272 563 - -
Spst4g00923 952 Pfam Leucine Rich Repeat 159 180 IPR001611 GO:0005515
Spst4g00923 952 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 1 271 - -
Spst4g00923 952 SUPERFAMILY Protein kinase-like (PK-like) 669 942 IPR011009 -
Spst4g00923 952 ProSitePatterns Protein kinases ATP-binding region signature. 674 697 IPR017441 GO:0005524
Spst4g00923 952 Pfam Leucine rich repeat N-terminal domain 2 32 IPR013210 -
Spst4g00923 952 SMART LRR_typ_2 83 107 IPR003591 -
Spst4g00923 952 SMART LRR_typ_2 156 179 IPR003591 -
Spst4g00923 952 SMART LRR_typ_2 399 423 IPR003591 -
Spst4g00923 952 SMART LRR_typ_2 180 204 IPR003591 -
Spst4g00923 952 SMART LRR_typ_2 276 300 IPR003591 -
Spst4g00923 952 SMART LRR_typ_2 489 512 IPR003591 -
Spst4g00923 952 SMART LRR_typ_2 301 324 IPR003591 -
Spst4g00923 952 SMART LRR_typ_2 351 375 IPR003591 -
Spst4g00923 952 Pfam Leucine rich repeat 86 145 IPR001611 GO:0005515
Spst4g00923 952 Pfam Leucine rich repeat 353 412 IPR001611 GO:0005515
Spst4g00923 952 Pfam Leucine rich repeat 254 313 IPR001611 GO:0005515
Spst4g00923 952 Gene3D Ribonuclease Inhibitor 1 151 IPR032675 -
Spst4g00923 952 Gene3D Ribonuclease Inhibitor 152 248 IPR032675 -
Spst4g00923 952 SUPERFAMILY L domain-like 345 552 - -
Spst4g00923 952 Gene3D Transferase(Phosphotransferase) domain 1 745 945 - -
Spst4g00923 952 SUPERFAMILY L domain-like 11 340 - -
Spst4g00923 952 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 745 947 - -
Spst4g00923 952 Pfam Protein kinase domain 669 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00923 952 PRINTS Leucine-rich repeat signature 399 412 - -
Spst4g00923 952 PRINTS Leucine-rich repeat signature 86 99 - -
Spst4g00923 952 Gene3D Phosphorylase Kinase; domain 1 647 744 - -
Spst4g00923 952 ProSiteProfiles Protein kinase domain profile. 668 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00923 952 PANTHER LEUCINE RICH REPEAT KINASE 2 177 941 - -
Spst4g00923 952 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 662 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00923 Spst-Chr4 38736201 38739187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00923 1 951 Receptor kinase-like Gene Family AT3G56370 58.787 0.0 1076
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Spst4g00923 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00923 - - gmx:100791204 1694.09