Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00920 ATGAGCGGCGGCAAGGAACGGAGTGTCAGTAGTAGTGACACTTGTCGAAGGGAGTTAAGCGTGACTTTCAATTCAGTCACCATGGGTTCGCTGGAAAACACCACTAGCTCCGGTAAGCAGTGTACCGACACCACCGCCTACGACGACCATGATTCCGTTAGCCACCGTCGGTCGCTGAGTGAGTCAAGGGATGAGGATTGCAAGACAACAGCAGTTGATAGATCTTGTGAATCCAACAAAAGAATTAAAGCTTCATCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAACTGGTCCCAAATTCCAACAAGCAGACAGATAAAGCTTCGATGCTGGACGAGGTTATCCAATATATGAAGCAATTGCAAGCAAATTTGCAGATGATGAATTGGATGAAAATGATGATGGTACCAATCACCATGCAACATCAACAACTTAAAATGTGTATGATGATGGCTCAGATGGGCATTGGAATGGGAATGAGTAAGGATATGGTTATGAATATGAACAACATGAACATTGCCCCCATGCTCCACCTTCCTCCCTTCGTGCCTATGCCTTCATGTGGTGATCCATTACAAGGAGAACCAGAGAAGTCCATGACAATGGATGCATACAGTAAAATGGTTGCTCTGTATAATCAGATGTATCATCCTCCAGATTCTAGTTCCAAGAAATGA 714 0.437 MSGGKERSVSSSDTCRRELSVTFNSVTMGSLENTTSSGKQCTDTTAYDDHDSVSHRRSLSESRDEDCKTTAVDRSCESNKRIKASSVHNQSERRRRDKINQRMKELQKLVPNSNKQTDKASMLDEVIQYMKQLQANLQMMNWMKMMMVPITMQHQQLKMCMMMAQMGIGMGMSKDMVMNMNNMNIAPMLHLPPFVPMPSCGDPLQGEPEKSMTMDAYSKMVALYNQMYHPPDSSSKK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00920 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 146 IPR036638 GO:0046983
Spst4g00920 237 SMART finulus 89 139 IPR011598 GO:0046983
Spst4g00920 237 MobiDBLite consensus disorder prediction 44 98 - -
Spst4g00920 237 MobiDBLite consensus disorder prediction 25 98 - -
Spst4g00920 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 133 IPR011598 GO:0046983
Spst4g00920 237 Pfam Helix-loop-helix DNA-binding domain 87 134 IPR011598 GO:0046983
Spst4g00920 237 MobiDBLite consensus disorder prediction 25 43 - -
Spst4g00920 237 Coils Coil 89 116 - -
Spst4g00920 237 Gene3D - 78 144 IPR036638 GO:0046983
Spst4g00920 237 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 27 235 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00920 Spst-Chr4 38726211 38728574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00920 1 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.658 5.95e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g00920 HLH 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00920 - - gmx:100788617 322.783