Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00918 ATGCAAGTTCTTAGTCACATTTCTTTTGTTGTAGTATTTTATTCTCTGCTCCTAAACCCTAGCCATTGTCTCAATCTCAAATTGTTTAATGATTCCAAAATTCGAAACGGTGATCAATGGCAAATAGCAGCAGCAACATGGTACGGAGAACCAGAGGGTGGTGGATCCGATGGAGGTGCTTGTGGATATTCTGACAGTGTGGAGAAACCTCCACTCTCTAAAATGGTGTCAGCAGGAGGTTCTTCTCTTTTTAAAGGAGGCAAAGGATGTGGAGCTTGTTATAAGGTGAAATGCAGAGAAAACTCGGCTTGTTCAGGAAATCCAGTGAGCGTGATGATAACTGATGAATGCCCTAGCTGTTTCTTAGGACCAGTCCATTTTGATCTGAGTGGTACTGCGTTTGGTTCCATGGCAACTTCAGGGAAAGCAACTAATCTTCGCAATGTTGGACAACTTAACATTCTCTACAAAAGGGTTGCATGCTCCTTTGGGAACTCCATAGCCTTTTCAATCGACAATGGGGCCAACCCTTACTATTTTGCGACAGAAATAGAATACGAAAATGGAGATGGTGACCTTGTGGACATTCAGTTGAAGCAAGCTAATTCTGACAAGTGGCTTCCAATGCAACGTTCATGGGGTTCAAGGTGGGCTTTGAACTTAGGTTCATGGATGCAACCACCATTCTCCATTAAGCTCACGGAAGATGCCAAGAACAGTAGGAAAACCATTGTGGCTTATAATGTAATCCCACGTGACTGGAAACCTGGTCAAGTTTATCGATCTGTTGTTAATTTTTAG 801 0.427 MQVLSHISFVVVFYSLLLNPSHCLNLKLFNDSKIRNGDQWQIAAATWYGEPEGGGSDGGACGYSDSVEKPPLSKMVSAGGSSLFKGGKGCGACYKVKCRENSACSGNPVSVMITDECPSCFLGPVHFDLSGTAFGSMATSGKATNLRNVGQLNILYKRVACSFGNSIAFSIDNGANPYYFATEIEYENGDGDLVDIQLKQANSDKWLPMQRSWGSRWALNLGSWMQPPFSIKLTEDAKNSRKTIVAYNVIPRDWKPGQVYRSVVNF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00918 266 Gene3D - 26 162 IPR036908 -
Spst4g00918 266 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Spst4g00918 266 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Spst4g00918 266 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Spst4g00918 266 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Spst4g00918 266 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Spst4g00918 266 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Spst4g00918 266 CDD DPBB_EXPB_N 40 161 - -
Spst4g00918 266 SUPERFAMILY Barwin-like endoglucanases 37 163 IPR036908 -
Spst4g00918 266 Pfam Expansin C-terminal domain 167 251 IPR007117 -
Spst4g00918 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Spst4g00918 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Spst4g00918 266 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Spst4g00918 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Spst4g00918 266 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Spst4g00918 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Spst4g00918 266 Pfam Lytic transglycolase 77 142 IPR009009 -
Spst4g00918 266 SUPERFAMILY PHL pollen allergen 166 262 IPR036749 -
Spst4g00918 266 PANTHER EXPANSIN-B3 17 266 - -
Spst4g00918 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Spst4g00918 266 SMART dpbb_1 76 148 IPR007112 -
Spst4g00918 266 Gene3D - 163 266 IPR036749 -
Spst4g00918 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 262 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00918 Spst-Chr4 38693154 38694706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00918 19 266 Expansin Gene Family AT1G65680 56.972 4.07e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00918 - - var:108346495 437.958