Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00916 ATGGCTTTGATATTGGATCAACAATCAAACTTCAAGCACTTCTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGGGATGAAAGTGGTCACATGGATGATGATGATCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGCAATGTGCCACCCAGCAACAAGCGCATGTATGCTTTAAGAACAAATCCTAATAGGTTAAAGAGTTGTAGGGTATGTGAGAATTGTGGCAAAGAGTTTTTATCATGGAAATCTTTTCTTGAACATGGAAAATGCACCTCTGAGGATGCCGACTCCTTTGTCTCTTCTCCGGGTTCTGAAGGTGATGACGGTGGTATCGGCGGCGGCGACCGGAGAGGATGTGGGTGGTCTAAAAGGAAAAGGTCTTTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGTCCATCAAGCGAGGAAGAAGACCTAGCAAATTGTTTAATGATGTTGTCCAATGCCATTGTAGATCCTCTTTCAGCTGAGCCTGAAGAATCATGTGCATCCGCTAGCAAGGAGGAAGAACAACGAAGAAATCCCATGAATTTCATTGCGCCATTGTCATACAAAGTTAATAACACTAACAATATTCACAACATGACCAACCTTGTTGATAACAAGGCCAAAGGGATTGCCAAAGGCTGGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAATTCTCACCAAGCATTGGGTGGGCACAGAGCAAGCCACAAAAAGGTTAAGGGTTGTTTTGCTGCAAGACTAGACAACCTTGACGACAATCTCATTACTGAGGATGATGTCATCACACAGGAAGAACTCTTTCCTTCAAAATCAAACTCCACCCTCCAATTCGACCATGGCTCCAACCCCACACTGGCCTCTTCCTCCAAGAGGAAATCCAAAGTGCATGAATGTTCAATTTGCCACAGGAGTTTCTCTTCAGGACAAGCTCTGGGGGGACACAAAAGGTGTCATTGGATCACTTCAAATGCACCTGACACCTCCACATTAACCAGATTTCAACAGTTTCAAGATAATTTGGACCAAATACCCAAGTTTGATACCTCTTCTGAGCCTCTTGATCTCAAGTTAGACCTTAACCTTCCTGCACCTTCTAATGACCTTGTAAGAAGGAATGTTTCTACAGAAATGTACTTGCAGCCTTGGGTTACATCAAAGGACGTTAAAGATGATAACAATAGCCAGTGTCAAAGTCTCCATCATAATAGCAATAGTGTTGATATTGACAACAATGATGAGGACAAAAACATTACTAACATAATGCAAAATATTGATAACGATGCTGAAAATAAGATCAAGTTGGCAAAATTAAGTGAGCTAAAGGACCTGAAATTTGGAGGCAATTCTTCACCATGGTTGCAGGTGGGAATCGGTTCAACTACTACTACTACTGATGTCACAACTGATAACTGCTAA 1470 0.4204 MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDADSFVSSPGSEGDDGGIGGGDRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLSAEPEESCASASKEEEQRRNPMNFIAPLSYKVNNTNNIHNMTNLVDNKAKGIAKGWFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLITEDDVITQEELFPSKSNSTLQFDHGSNPTLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFQDNLDQIPKFDTSSEPLDLKLDLNLPAPSNDLVRRNVSTEMYLQPWVTSKDVKDDNNSQCQSLHHNSNSVDIDNNDEDKNITNIMQNIDNDAENKIKLAKLSELKDLKFGGNSSPWLQVGIGSTTTTTDVTTDNC 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00916 489 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Spst4g00916 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Spst4g00916 489 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Spst4g00916 489 PANTHER OS02G0659100 PROTEIN 2 481 - -
Spst4g00916 489 MobiDBLite consensus disorder prediction 38 59 - -
Spst4g00916 489 MobiDBLite consensus disorder prediction 38 54 - -
Spst4g00916 489 Gene3D Classic Zinc Finger 230 336 - -
Spst4g00916 489 MobiDBLite consensus disorder prediction 107 134 - -
Spst4g00916 489 ProSitePatterns Zinc finger C2H2 type domain signature. 316 336 IPR013087 -
Spst4g00916 489 Pfam C2H2-type zinc finger 232 256 - -
Spst4g00916 489 Pfam C2H2-type zinc finger 313 338 - -
Spst4g00916 489 Pfam C2H2-type zinc finger 13 35 - -
Spst4g00916 489 Gene3D Classic Zinc Finger 11 103 - -
Spst4g00916 489 SMART c2h2final6 232 254 IPR013087 -
Spst4g00916 489 SMART c2h2final6 314 336 IPR013087 -
Spst4g00916 489 SMART c2h2final6 13 35 IPR013087 -
Spst4g00916 489 SUPERFAMILY beta-beta-alpha zinc fingers 231 336 IPR036236 -
Spst4g00916 489 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Spst4g00916 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 314 336 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00916 Spst-Chr4 38684711 38686180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00916 136 379 C2H2 Transcription Factor Family AT1G02040 35.102 1.86e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g00916 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00916 - - gmx:100793846 820.846