Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00915 ATGGAGAAGCACAAGTGCAAGCTTTGTTTTAGGAGTTTCGCAAATGGAAGAGCTTTGGGAGGTCACATGAGGTCTCACATGATGAACCTACCCGTTCCACCGAAAGAGAGCGAGTTCGTCCCGGTTCAACTCAGTTTTGAGGCCGAGTCATCCCCTTCTCAATCCTCTTCTTCCTTCTACGTTCTCAGAGAGAATCCCAAGAAAAGTTTCCGTTTTGCAGATCCTGAATTCTCCTTCGCAGCAGACACAGGCTCCGTCATCCTCCAAGATAGAGAAAGCGAGACCGAGTCATCCAAGAACCCAACTCGGAAACGGTCCAAGAGAGCGTGGCAACTCGGAGAACCCCTAAAAAGGATGAAACTTTGTGAAAATAATAGCAAGAACGAATCTGCTAGTTCTGCTTCGGATACCACAACGGAAGAAGACTTGGCATTTTGTTTAATGATGCTGTCTCGTGACAGGTGGAAGGGGTATGATGATCATAAAAGCATACAACAGTATAATGATGAGATTGAAGATGAGGATGACGATGACGATGACGAAGAAGATGAGGATGAAGATGAGGATGATGAAGCAAAAAATGGTTATGAATCCGAGGAGATGAAATCTGTTAAGAAGAGTAACAAGGTGCGAGGGAGGTACAAATGTGAAACGTGTAACAAGGTGTTTCGATCTTACCAAGCTCTTGGTGGGCACAGAGCGAGTCACAAGAAGATGAAGTTGAACTGTGAAACCGAGGTTCAGAAAGCTGCACTTGAACTGGAGCATGTTGCTACGGCGGAGAAGAAAATCCACGAATGCCCCGTTTGCTCTAGAGTCTTTGGTTCGGGTCAAGCCCTTGGTGGACACAAGAGAACACATGTTATAGGTTCTTCTGCAACTACTGCCACCGCAACTGTTAGAACTTCTGCAGCTGTTTCGGTTAGAGCTTCTGCTAGAATGGAAGACAGTTTGTTAGATCTTAATCTCCCAGCTCCAATGGATGATGATGAAGATATTAGCCAGTTGGATCACTCTGCTCTTTCGGATGCAGAGTTTGTCAAACAGTGA 1050 0.4552 MEKHKCKLCFRSFANGRALGGHMRSHMMNLPVPPKESEFVPVQLSFEAESSPSQSSSSFYVLRENPKKSFRFADPEFSFAADTGSVILQDRESETESSKNPTRKRSKRAWQLGEPLKRMKLCENNSKNESASSASDTTTEEDLAFCLMMLSRDRWKGYDDHKSIQQYNDEIEDEDDDDDDEEDEDEDEDDEAKNGYESEEMKSVKKSNKVRGRYKCETCNKVFRSYQALGGHRASHKKMKLNCETEVQKAALELEHVATAEKKIHECPVCSRVFGSGQALGGHKRTHVIGSSATTATATVRTSAAVSVRASARMEDSLLDLNLPAPMDDDEDISQLDHSALSDAEFVKQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00915 349 SMART c2h2final6 214 236 IPR013087 -
Spst4g00915 349 SMART c2h2final6 4 26 IPR013087 -
Spst4g00915 349 SMART c2h2final6 265 287 IPR013087 -
Spst4g00915 349 Gene3D Classic Zinc Finger 211 287 - -
Spst4g00915 349 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 348 IPR044303 GO:0006355
Spst4g00915 349 MobiDBLite consensus disorder prediction 92 110 - -
Spst4g00915 349 Pfam C2H2-type zinc finger 265 287 - -
Spst4g00915 349 Pfam C2H2-type zinc finger 4 27 - -
Spst4g00915 349 Pfam C2H2-type zinc finger 213 238 - -
Spst4g00915 349 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Spst4g00915 349 MobiDBLite consensus disorder prediction 323 349 - -
Spst4g00915 349 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Spst4g00915 349 MobiDBLite consensus disorder prediction 164 207 - -
Spst4g00915 349 ProSitePatterns Zinc finger C2H2 type domain signature. 267 287 IPR013087 -
Spst4g00915 349 SUPERFAMILY beta-beta-alpha zinc fingers 213 287 IPR036236 -
Spst4g00915 349 Coils Coil 164 184 - -
Spst4g00915 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 287 IPR013087 -
Spst4g00915 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Spst4g00915 349 MobiDBLite consensus disorder prediction 88 110 - -
Spst4g00915 349 MobiDBLite consensus disorder prediction 169 194 - -
Spst4g00915 349 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Spst4g00915 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00915 Spst-Chr4 38624165 38625214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00915 1 331 C2H2 Transcription Factor Family AT3G60580 45.294 4.56e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g00915 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00915 - - gmx:100776462 431.024