Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00891 ATGTCTTCCAGTTTCACTGACCTCCTTTCCAACAGCAATAGTGATGATCATTTTGGACTTGAATTTCCCAACAATTTCAAGACACTTCAACCTCCTTCACTCCCTTCTTATGCTGAGTTCCCACCTGGATTTGGCCCAACAACACAGTCATTGAACTCATCCCTCTTGTTTTCTTCTCAAAATGTTCCTGCATCTTACACAACTGAGTCCTCTTCTAGCATATGCTTCAACATGAGACATAGTTCAACTGCGGAAAAGCTAGGAAACAAGGAGGAAGAGAGAAACTACTCTGATCTCTCTTTCCTAACAAATGTGTCTCTGTTTCAGTCCTCCAAAAACATGTTTCAAGTGGAGCCACTAAAGATACAGGACACAATTATATTCCATGAAGCCGCCAAGCAAACAGATTTCTCATATGAGAGGGCAGAAACAAAATCTGAATATGCATCCACCCAGGGATTCTCCACAGAAATTGCTTCAATCAAACCTGAAATACAAAGCAATTATACTTCTGGATCTGGTCCATTTTACTCCAATAATGCTTTTAAGTCTATTAGAGAACAAAGGAGATCAGAAGATGGCTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGTGAGAATCCTCGCAGTTATTACAAGTGCACGCACCCAAATTGCCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATGTTACTGAAATAGTGTACAGGGGAAGTCACAATCATCCCAAACCACATAATAGAAAAAATGTCTCTCAATCATCAATTCATCAAACTTCTTCATCCTGCACTATATCAGGGATTTCAGATCAGTCTTTGGGAGAGGAAGATTTTGAGCAAACTTCACAAACTACTTGTTCTGTAGGGTGTGATGATGACTTTGGATCTGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATGACTATTATAATTCCTCAGCTGGGAGTAGAACTGTAAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGATATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTGAACCCAGGCTGTCTAGTAAGAAAACATGTTGAGAGAGCTGCAAATGATGTGAAAGCTGTGATTACAACTTATGAAGGGAAACATAACCATGATGTGCCTTTAGGACGAGGAAGTGCAAGCTATAACAGAACAACTCTAAACAACAACACCAGCAACGTAACAGACCCTGCACCTGTAAGGCCTTTAGCAGTGACTAATTCACTAATAGGCACAAAGCTACCAGCATCTGCAAGTCAAGAACCTATTCCAATGGACTTGTTGCTGAGCCCTAGAAGTCCAGAATTTTCGGGGAATGACTCATTCCTTCAGTCTTTTTTTACAAAGAACTTCTAA 1437 0.4043 MSSSFTDLLSNSNSDDHFGLEFPNNFKTLQPPSLPSYAEFPPGFGPTTQSLNSSLLFSSQNVPASYTTESSSSICFNMRHSSTAEKLGNKEEERNYSDLSFLTNVSLFQSSKNMFQVEPLKIQDTIIFHEAAKQTDFSYERAETKSEYASTQGFSTEIASIKPEIQSNYTSGSGPFYSNNAFKSIREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTHPNCPTKKKVERSLEGHVTEIVYRGSHNHPKPHNRKNVSQSSIHQTSSSCTISGISDQSLGEEDFEQTSQTTCSVGCDDDFGSEAKRWKGENENDDYYNSSAGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVNPGCLVRKHVERAANDVKAVITTYEGKHNHDVPLGRGSASYNRTTLNNNTSNVTDPAPVRPLAVTNSLIGTKLPASASQEPIPMDLLLSPRSPEFSGNDSFLQSFFTKNF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00891 478 SUPERFAMILY WRKY DNA-binding domain 333 401 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 Pfam WRKY DNA -binding domain 342 398 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 Pfam WRKY DNA -binding domain 192 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 MobiDBLite consensus disorder prediction 253 271 - -
Spst4g00891 478 FunFam WRKY transcription factor 33 328 394 - -
Spst4g00891 478 ProSiteProfiles WRKY domain profile. 186 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 ProSiteProfiles WRKY domain profile. 336 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 Gene3D WRKY domain 326 402 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 Gene3D WRKY domain 177 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 132 418 IPR044810 GO:0003700
Spst4g00891 478 SMART WRKY_cls 341 400 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 SMART WRKY_cls 191 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 FunFam WRKY transcription factor 179 251 - -
Spst4g00891 478 SUPERFAMILY WRKY DNA-binding domain 186 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g00891 478 MobiDBLite consensus disorder prediction 241 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00891 Spst-Chr4 37438857 37441826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00891 186 455 WRKY Transcription Factor Family AT2G38470 55.629 2.67e-100 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst4g00891 WRKY 4.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00891 K13424 - gmx:102666898 699.508