Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00887 ATGCAGATTAGCTTCGATGTCTCGGAGGCGGAACTCGCTTCACTGAAGACGACTCAAGTTCAGCTTGCAAGCGCTGTTCAATTCATCGGTGTCCAGTATAGCAAGGTGCATGATAATGGTGCACGTGCACATGGTGGGACCCGGGTCATGTTAGGAGGGTCCTCTGAGTTTGTGTCAATGTACAGCCAAAAGGGTTCAAGTGGAGTTAATCAAGATGCATTCACTGTTTGGAAGGACTTCACCGAGCAAAAGGACATGATCTTTTGTGGCGTGTTTGATGGTCATGGTCCTCTGGGACATAAGTTTTCACAGTGTGTACGTGACAAACTACCCTTAATACTCTCTTCATCAATCAAACAGTCACAAGAAAAAGTCATCAAACACATTGATACTGATGTAGATGGAAGCCGTCATAGTGAAGCCGTCTATGTTGAGGATAACCAAAACATGTCCTTTTCGACATGGGAGGGAAGCTTTATGAGGTGTTTTAGTGAAATGGATGAAATCCTTGCTAAGGAGGTAGATACTAAAGGATTTGATGGCGGTAGCACTGCAGTAACTGTTATCAAACAGGGTGACAAATTAATAATTGGCAATTTGGGGGATTCTCGTGCAGTTCTTTGTAGAAGAGCACATGACAACCATCTTATTCCTGTTCAACTTACTGTTGACTTGACCCCAGATATTCCAAGTGAAGCTTTAAGAATCATTAATTGTGGAGGTAGAATTTTTTCTGCAAAAGAAGATCCAGGTGTAAATAGAATATGGAGGCCAAATGGGTGCCGCCCTGGACTGGCTATGGCAAGAGCCTTCGGGAATTTTTGCCTAAAAGACTGTGGCCTCTCCTCAGTCCCTGATCTTTCATACAGAAAACTTACAAAGCAGGATGAGTTCGTGGTTTTGGCTTCTGATGGGGTATGGCATGTGCTTACAAACAGTGAAGTAATGAACATAGTTGTTTCCGCACCAAAAAAGTCCATGGCAGCCAAATTGTTAGTAAAGCGTGCAGTTAAGGCTTGGAGGTGTAAGTATGGTTTCAAGGTTGATGATTGTACAGCTATATGCTTGTTCCTCAGGGATTAG 1083 0.4331 MQISFDVSEAELASLKTTQVQLASAVQFIGVQYSKVHDNGARAHGGTRVMLGGSSEFVSMYSQKGSSGVNQDAFTVWKDFTEQKDMIFCGVFDGHGPLGHKFSQCVRDKLPLILSSSIKQSQEKVIKHIDTDVDGSRHSEAVYVEDNQNMSFSTWEGSFMRCFSEMDEILAKEVDTKGFDGGSTAVTVIKQGDKLIIGNLGDSRAVLCRRAHDNHLIPVQLTVDLTPDIPSEALRIINCGGRIFSAKEDPGVNRIWRPNGCRPGLAMARAFGNFCLKDCGLSSVPDLSYRKLTKQDEFVVLASDGVWHVLTNSEVMNIVVSAPKKSMAAKLLVKRAVKAWRCKYGFKVDDCTAICLFLRD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00887 360 ProSiteProfiles PPM-type phosphatase domain profile. 57 358 IPR001932 -
Spst4g00887 360 CDD PP2Cc 57 358 IPR001932 -
Spst4g00887 360 Gene3D - 54 359 IPR036457 -
Spst4g00887 360 PANTHER PROTEIN PHOSPHATASE 56 356 IPR015655 GO:0004722|GO:0006470
Spst4g00887 360 SUPERFAMILY PP2C-like 55 359 IPR036457 -
Spst4g00887 360 SMART PP2C_4 47 356 IPR001932 -
Spst4g00887 360 Pfam Protein phosphatase 2C 88 338 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00887 Spst-Chr4 37385672 37390084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00887 48 360 PP2C-type Phosphatase Gene Family AT1G16220 46.914 1.10e-103 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00887 - - vra:106755106 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00816 1 10376490 10379238 Spst4g00887 4 37385672 37390084 PCT