Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00869 ATGGAAGAACCCCAACTCTTACAAGACCCAAACTTCCCTCTCTTCAAAACCACTCGTAAAACTCCTTCATTGGTCGCTACCACTGTCGCAACTATAGACACAACCACCGCTGTAAACCCTAGCACTGCCGCCGACCGCCATGAATACCTTGACGAAACCGCCACAGACGGTGAGACGTTCGGCGATCTAGGCCTAGCGGAATGGGCGGTGAAGACATGCTGGGAGCTCGGAATGCAGAAACCGCGGCGGGTACAGCAGGTATGCATTCCGCGCGTGCTGGAGGGCCGGCACGTGCTTGGCATCGACGAAACTGGGAGCGGAAAGACTGCGGCCTTCGCTCTCCCGGTCCTGCACCGCCTCGCCGAACATCCCTTCGGCGTGTTCGCACTCGTCGTGACGCCAACGCGCGAGCTCGCCTTCCAACTCGCGGAGCAGTTCCGTGCCCTGGGCTCAGCCGTTCAGCTCCGCATCACGGTGGTGGTTGGCGGCATGGACATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCACATATCGTCATTGCCACGCCTGGGAGAATCCATGTCTTGCTCCGCGACAATCCTGATATTTCTCCTGTTTTCTCCAAAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTTTGGATGTTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAATGCTTACCTGAAAATCGACAAAACCTGTTCTTTTCTGCAACAACTACAAGTAATCTGCAAAAGTTGCGGGAACGTTACAAAGAAAAAATGTATGTCTATGAGGCATATGAAGGCTATAAAACAGTTGAATCACTTAAGCAACAGGTTATATTCATCCCTAAAAAGGTGAAGGATGTTTATTTGATGCATATTTTGTCTAAAATGGAAGATATGGGAATTCGGTCTGCCATTGTGTTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTACTGGATCAAGAAGCCGCCGCTCTGTATTCATTCAAATCACAAACTCAGAGGCTTGAAGCACTTCATCAATTTAAATCAGGAAAAGTTTCTGTACTGCTAGCAACTGATATTGCCAGCCGTGGATTAGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTAGGTCGTACAGCAAGAGCAGGTAGAGAGGGACTGGCTTTGACCGTTGTTACCCAGAACGATGTTGAGCTTATTCATGAAATAGAAGCGCTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAGAAGGTTTTTAGTGCTAAGAATGTAGCAGAAATGAAAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGAAAAAAACAGAAACTGAAAATGCTTGCCGAGAAAGGATTGTTGAAGAAAAATAAAAAGAGAAAACTAAGTAAAGAATTTTCGGAGAAAGGGAAAGAACAAAAGAAAGAGGTAGCACGAGAGAGAGGTTTATTGAAGAAAAAAAAGTTGAAAGAAAGAAGTAAAGAATTTGCAGAGGAAGTAGAGGTATCAACTCCAAAGAAAAGGAGTAAGAAGAGACGGTAA 1617 0.4508 MEEPQLLQDPNFPLFKTTRKTPSLVATTVATIDTTTAVNPSTAADRHEYLDETATDGETFGDLGLAEWAVKTCWELGMQKPRRVQQVCIPRVLEGRHVLGIDETGSGKTAAFALPVLHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVQLRITVVVGGMDMLKQAKDLVARPHIVIATPGRIHVLLRDNPDISPVFSKTKFLVLDEADRVLDVCFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYKEKMYVYEAYEGYKTVESLKQQVIFIPKKVKDVYLMHILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSVLLATDIASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGREGLALTVVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQKLKMLAEKGLLKKNKKRKLSKEFSEKGKEQKKEVARERGLLKKKKLKERSKEFAEEVEVSTPKKRSKKRR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00869 538 CDD SF2_C_DEAD 274 406 - -
Spst4g00869 538 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 208 216 IPR000629 -
Spst4g00869 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 262 IPR014001 -
Spst4g00869 538 Pfam Helicase conserved C-terminal domain 301 397 IPR001650 -
Spst4g00869 538 MobiDBLite consensus disorder prediction 486 531 - -
Spst4g00869 538 Pfam DEAD/DEAH box helicase 83 251 IPR011545 GO:0003676|GO:0005524
Spst4g00869 538 SMART helicmild6 316 397 IPR001650 -
Spst4g00869 538 CDD DEADc_DDX49 60 263 - -
Spst4g00869 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 417 IPR027417 -
Spst4g00869 538 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 58 535 - -
Spst4g00869 538 Gene3D - 268 442 IPR027417 -
Spst4g00869 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 436 IPR001650 -
Spst4g00869 538 MobiDBLite consensus disorder prediction 473 538 - -
Spst4g00869 538 Gene3D - 49 262 IPR027417 -
Spst4g00869 538 SMART ultradead3 77 277 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00869 Spst-Chr4 36617554 36622304 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00869 58 410 Eukaryotic Initiation Factors Gene Family AT3G13920 32.861 5.51e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00869 K14778 - gmx:100804060 828.935