Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00815 ATGGACTTTGGAGACACCAACATCTTCACCCTCAACACCCACACCAAAGAGGAAAACAGTAACAACATTCTTTGGTATTCATCATGGCAACAACAACCTACCAATGTTGTTACTACTACTAATTCTACCCACATTAATGCACCCCATCCCACCACCACGCCCGAGGGTTACGACCGCCGACACCACCGCCAAGTGTACGGCGGCGAAAGGTGTCACGTGCATGTGGACCCTCACCTCACGTGCTTGCATCTTGGTAAGCGACATTACTTTGAGGATTCCACCAACGGTGAGGGTAATACTCATAATAATAACGTTGTTACTCTGGGGAACCCACACGTGTGCGGTGGTGATGGTGTTACTATTTCGGGGAACCGACACGTGGGTGATGGTGTTATTACTCTGGGGAACAGACAGGTGTACGGTGGTGGTGGTTCGGGTTATCTTTTGGAGGGTAATGATAAGAGAGCGAGGGGGTATTATGGAGGACCTGCGGTGGTGGGTGGCGGTGACGGCAGCGGGAAAACGGCGGCGTTTGGGTTAGTTCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCACTGGTGAATGCAAAAGAGTACCACAGGAGGCACAGAGTTTGTGATATGCATTCGAAGGCCCCAAAAGTTGTGGTGTTGGGGGTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGAGTCAAAGAGAAGTTGTAGGAGAAGATTAGCTGGGCATAATGAGAGAAGAAGAAAGAGCTCTAACCTTTATGTTACTAGGAGTTCCAGACAAGGGTGTGCTCTCTCTCTTCTGTCATTTGGGAGCAGTGATAATTGGTCATCTCATGCTGATCTCTCCACAAGATGCAGCGCAGCATTGCGTGAACTGATAGCAGAAAACCGTGCTGCCCTAATGACTAGACAACAACAACACTACCAACAACAACAACACCAACTTGTTTATGATAGAGATCACTGCCATGTTATGCCCCACCAAGATGATGCAGTGGATGAAGAACAAGACTTTGAAGAGATGCAACCTGAGTCCAATTATTTTGCACAACACATGTTTCCCCAGACACAATAA 1101 0.4868 MDFGDTNIFTLNTHTKEENSNNILWYSSWQQQPTNVVTTTNSTHINAPHPTTTPEGYDRRHHRQVYGGERCHVHVDPHLTCLHLGKRHYFEDSTNGEGNTHNNNVVTLGNPHVCGGDGVTISGNRHVGDGVITLGNRQVYGGGGSGYLLEGNDKRARGYYGGPAVVGGGDGSGKTAAFGLVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKVVVLGVEQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSNLYVTRSSRQGCALSLLSFGSSDNWSSHADLSTRCSAALRELIAENRAALMTRQQQHYQQQQHQLVYDRDHCHVMPHQDDAVDEEQDFEEMQPESNYFAQHMFPQTQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00815 366 Pfam SBP domain 184 257 IPR004333 GO:0003677
Spst4g00815 366 SUPERFAMILY SBT domain 182 259 IPR036893 GO:0003677|GO:0005634
Spst4g00815 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 106 323 IPR044817 GO:0003677
Spst4g00815 366 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
Spst4g00815 366 Gene3D - 179 245 IPR036893 GO:0003677|GO:0005634
Spst4g00815 366 FunFam Squamosa promoter-binding-like protein 14 176 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00815 Spst-Chr4 35444054 35445958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00815 181 268 SBP-box Gene Family AT1G27370 64.773 1.32e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst4g00815 SBP 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00815 - - pvu:PHAVU_010G056200g 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00815 4 35444054 35445958 Spst4g00815 4 35444054 35445958 ECH
Spst4g00815 4 35444054 35445958 Spst1g00780 1 10116254 10117081 PCT