Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00799 ATGCACGGAAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGCTACTGAACCATGTGAAGAAGTGTGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGGACTGGCAAATCGTGTCGTCTTCGTTGGGTCAACAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTTGAGGAAGAGAGGATTGTGATAGAGTTGCAGGCACAACTTGGGAACAGGTGGGCTAAGATTGCTTCCTATTTGGCAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGATTGGCCAGGATTCTGCACACATCAGCAACAACTCCCAAATCACAGAAAAATAAAACTAAAGTTCCTACATTTCTTGATGTTCCAACTTTGAAGGCTCCAAAGTTCAGTTCATCCTCAGAGGGAGAGTCATTATCAAATTCTCATTCATGCGCAGTACCCTTGATTGAGAATTCTGAGGTTATCAAAATGGTGTCTTTACCAGATCTCATAAAGTCTGAGTTACCTAGTTTTGACACACTCAATGTTGAACAAGAGTTTACCCTTTTTGAGAGCTATAAAAGCATTGACCAGAATCAACAGATTTCCTTTCCTCAGATTCCAGAACTCCAAAATGATCTCAAATTCCCATTGGGAAACCAAGATGTCTTGGCCAGAATTGATGAGTCATGTTTCATTGAAGACTTTTGTGCTTTTGATGCATATGAGTTTGGAATAGGTTCACAACACCCCATTGGGTTACCTTTCTTTGAGCCACCAGGAAGTTTCAGCACTGGGACGAGGGATGGCATTGATAATTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTACGGACATATTTGATCACATGGACCCACCTGCAAGCCCTTCAAACTTATGA 945 0.4233 MHGKKEQEEYIRKGPWKAEEDEVLLNHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQLGNRWAKIASYLAGRTDNDVKNFWSSRQKRLARILHTSATTPKSQKNKTKVPTFLDVPTLKAPKFSSSSEGESLSNSHSCAVPLIENSEVIKMVSLPDLIKSELPSFDTLNVEQEFTLFESYKSIDQNQQISFPQIPELQNDLKFPLGNQDVLARIDESCFIEDFCAFDAYEFGIGSQHPIGLPFFEPPGSFSTGTRDGIDNFKSSDSFFDDFPTDIFDHMDPPASPSNL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00799 314 FunFam Transcription factor GAMYB 68 137 - -
Spst4g00799 314 PANTHER TRANSCRIPTION FACTOR DUO1 3 313 - -
Spst4g00799 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Spst4g00799 314 Pfam Myb-like DNA-binding domain 69 108 IPR001005 -
Spst4g00799 314 FunFam MYB transcription factor 13 65 - -
Spst4g00799 314 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Spst4g00799 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Spst4g00799 314 CDD SANT 15 60 IPR001005 -
Spst4g00799 314 CDD SANT 69 108 IPR001005 -
Spst4g00799 314 Pfam Myb-like DNA-binding domain 16 67 - -
Spst4g00799 314 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Spst4g00799 314 SMART sant 12 62 IPR001005 -
Spst4g00799 314 SMART sant 66 114 IPR001005 -
Spst4g00799 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst4g00799 314 Gene3D - 68 137 - -
Spst4g00799 314 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00799 Spst-Chr4 35053080 35055141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00799 1 311 MYB Transcription Factor Family AT3G60460 47.988 4.31e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00799 Myb_DNA-bind_6 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00799 K09422 - gmx:100805384 511.916