Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00790 ATGTCCCTCCACCGCCATGTTTGCACTACCTCAAAGCTCTCAACGATCCCTTGGAAGTACAAGAAGTTCGCCATAGCACAAGGCCAGAAGTCCCTTACCGATTATCTCCACGCCACGCGCTGCATCCCTTACGCCTACGCTGATCAAATCTCCAAGAACTCCCACACTGCCCTCACCAATCTCATCAGCAAGCTCGGTTCTTTCTCTGTTTCCCACTTCCCCCACACCATCAACAAATTCCTCAGGTACAACCCCATCAACGAATTTGAGTTCTTCTTCGAGAGCATTGGTATCCACCCCTCCAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGAAGATGGGACCGTTTTGGATGCTGCTTGTGTTCTCAGCGAATTTGGGTTTCCCTGGGACAAGCTTGGGGTTCTATATGTGAAGAGTGGGTGTGTGTTCAAGTGGGGTGCTTCTGAGCTGAAGGATAGGCTTTGTGGGTTCAAAAGATATGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCCTGGCTTTTCCCTTTGTGTTTGATGGCCTAGAGGGTGCTGAGATTGATGCTTTGTTTTGTGATTTGAGGTTGCTGTTTGGGGAGTTTGGTTTGGCTGGGTGTGTTGAGGTGAAGGGGAATGGTGTGGATGATTGGGTTAGGGTGTGTAAGAAGATAAGGTTGTTTTATGATTTGACTGGTGGGAAGAACTTTGGGGAGCTCATTGGAGGGAACAATGGTGTTGGTGTAGGTGTTATTGTTGAGCATGGGGAAGAGGAGTTGGTTCAAGCAATTGCGTATTTTTGTAGGTTTGGTGCGAAGGAGGACGTGGCACGGTTGATTGTAAATGGACCGGAATTGTTGGAGCTTGATATGGAATCGAGGGTGGTCAATGTGATGAAGCTTTTGAAACACTTTGGAATGAGCTCCAATGGTGTTGATGATGTTAGGAGGGATTATGCTCATGTGTTGGGGACAGTCAAGATGAGTAATCTGCCCAATGTGATGAGGGCTTTGGGTTTACATGAGTGGTTCTTTGCCAAGATCAAGGATGGGAATTATAGGTTGTTGGTTAGTTTTGTCACGAGCAATCCCGATGCGGTACGAGATAAAGATTACCTAGGTTGTTTGAAGGCTATTGAGGCGTCAAGAATGCCAACTCACAGTATGAAGAAGTTGAACTTCTTGCACGCCATTGGCTTTGGAGAAAATGCTTTAACCATGAATGTTTTCTCCCACTTGCACGGAACAAGTTGTGAGTTACAAAATAGATTTGACTGCCTTCTACATTTTGGGATTGAGTTTTCAAAGGTCTGTAAGATGATCAAGGCTCATCCTAAGATTCTTAGTCAAAACCCTGAAAATTTGAAGCAAAAGATTAATTTCTTCTGTCAGGAAATGGGATACTCATTGGAGAATTTGGTCACTTTTCCAGCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCTAGGCACAGATTTCATTTGTGGATAATGGAAAAGGGTCTGTCTTTAAAAAAATATTCCATTGCAAGCATGGTTGCAACAAGCAACAGGAATTTGGTTGCTCGCGCTTATAGTATCCACCCTGCTGTTCCAAAACATTGGTTTGAACAGTTTTATCCCTGA 1638 0.4451 MSLHRHVCTTSKLSTIPWKYKKFAIAQGQKSLTDYLHATRCIPYAYADQISKNSHTALTNLISKLGSFSVSHFPHTINKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSEDGTVLDAACVLSEFGFPWDKLGVLYVKSGCVFKWGASELKDRLCGFKRYGFCNVQVVGICLAFPFVFDGLEGAEIDALFCDLRLLFGEFGLAGCVEVKGNGVDDWVRVCKKIRLFYDLTGGKNFGELIGGNNGVGVGVIVEHGEEELVQAIAYFCRFGAKEDVARLIVNGPELLELDMESRVVNVMKLLKHFGMSSNGVDDVRRDYAHVLGTVKMSNLPNVMRALGLHEWFFAKIKDGNYRLLVSFVTSNPDAVRDKDYLGCLKAIEASRMPTHSMKKLNFLHAIGFGENALTMNVFSHLHGTSCELQNRFDCLLHFGIEFSKVCKMIKAHPKILSQNPENLKQKINFFCQEMGYSLENLVTFPAFLCFDLENRIKPRHRFHLWIMEKGLSLKKYSIASMVATSNRNLVARAYSIHPAVPKHWFEQFYP 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00790 545 Gene3D Transcription termination factor 3, mitochondrial 258 543 IPR038538 -
Spst4g00790 545 Pfam mTERF 421 522 IPR003690 GO:0003690|GO:0006355
Spst4g00790 545 FunFam Transcription termination factor MTEF18, mitochondrial 379 539 - -
Spst4g00790 545 PANTHER CGI-12 PROTEIN-RELATED 32 527 IPR003690 GO:0003690|GO:0006355
Spst4g00790 545 SMART mt_12 473 507 IPR003690 GO:0003690|GO:0006355
Spst4g00790 545 SMART mt_12 280 311 IPR003690 GO:0003690|GO:0006355
Spst4g00790 545 SMART mt_12 441 472 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00790 Spst-Chr4 34919070 34920707 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst4g00790 mTERF 8.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00790 - - gmx:100812245 870.152