Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00788 ATGTGTGAAAAAGATGATGGGTTGGGGTTGGGGTTGGGTTTGGGGTTGAGTTTGAGTTTGAGTTTGAGAAAGGGAGAAAATGATGATAATAATCTGAATCAACTACACCCTTCCAACATGCACAAAGCTCCTCAACCTGTTCCAAACCAAAGGGCTTCCTTCAATAATTTGTTCCATTTCCATGGTGCGTCTCACGTGACCGATCGGAGCTCCGAGCCGCCGCCGTTCTTCTGCGGAATAGACGTCAACTTGCCGCCACCACCACCGTCGATGGCACGGTGCGATGAGGACAACGGCGTGTCGTCGCCGAACAGCACAGTATCGAGCATCAGCGGGAAGAGGAGCGAAAGAGAGGAGAATGAGAGAGGGTCGTGTTCTCGTGGCGGAAGTGAAGATGATGACGGCGGAGGGTGCGGTGGCGAAGGCGACGGTGACACTTCGAGGAAAAAACTGAGGTTGTCGAAGGAACAGGCCTTGGTACTGGAAGAAACGTTCAAGGAACACAACACTCTGAATCCGAAACAAAAGCAAGCTTTGGCAAAGCAGCTGAATCTGAGTCCTAGACAGGTTGAGGTCTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTTTGAGAATCTAACTGAGGAGAATAGGAGGCTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCCCCACAGCTATACATGCACATGAACCCTCCCACCACTCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCCGCATCCTCCTCCTCATCAACTGCCATTCCTTCTGCACCACCTCCGGCTCATCGCAACCCGTTGGGGTCTACTGTCCAGCGGCCAGTGCCAGTCAACCCTTGGGCAGCAATGTCAATTCAACGCCGTCCACTGCCATAA 936 0.5128 MCEKDDGLGLGLGLGLSLSLSLRKGENDDNNLNQLHPSNMHKAPQPVPNQRASFNNLFHFHGASHVTDRSSEPPPFFCGIDVNLPPPPPSMARCDEDNGVSSPNSTVSSISGKRSEREENERGSCSRGGSEDDDGGGCGGEGDGDTSRKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCFENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSSTAIPSAPPPAHRNPLGSTVQRPVPVNPWAAMSIQRRPLP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00788 311 Coils Coil 210 240 - -
Spst4g00788 311 SMART halz 204 247 IPR003106 GO:0006355|GO:0043565
Spst4g00788 311 Pfam Homeobox associated leucine zipper 204 238 IPR003106 GO:0006355|GO:0043565
Spst4g00788 311 MobiDBLite consensus disorder prediction 97 111 - -
Spst4g00788 311 Gene3D - 139 209 - -
Spst4g00788 311 SMART HOX_1 146 208 IPR001356 GO:0003677
Spst4g00788 311 MobiDBLite consensus disorder prediction 88 150 - -
Spst4g00788 311 ProSitePatterns 'Homeobox' domain signature. 179 202 IPR017970 GO:0000981|GO:0006355
Spst4g00788 311 ProSiteProfiles 'Homeobox' domain profile. 144 204 IPR001356 GO:0003677
Spst4g00788 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 277 - -
Spst4g00788 311 MobiDBLite consensus disorder prediction 112 129 - -
Spst4g00788 311 CDD homeodomain 148 205 IPR001356 GO:0003677
Spst4g00788 311 Pfam HD-ZIP protein N terminus 1 118 IPR006712 GO:0005634
Spst4g00788 311 MobiDBLite consensus disorder prediction 27 50 - -
Spst4g00788 311 Pfam Homeodomain 148 202 IPR001356 GO:0003677
Spst4g00788 311 MobiDBLite consensus disorder prediction 269 311 - -
Spst4g00788 311 FunFam Homeobox-leucine zipper protein 18 136 209 - -
Spst4g00788 311 SUPERFAMILY Homeodomain-like 135 205 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00788 Spst-Chr4 34884916 34887890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00788 31 309 Homeobox Transcription Factor Family AT3G60390 58.784 1.01e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g00788 HD-ZIP_N 4.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00788 K09338 - gmx:100798480 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00788 4 34884916 34887890 Spst4g00788 4 34884916 34887890 ECH
Spst4g00788 4 34884916 34887890 Spst1g01279 1 15498031 15500459 PCT