Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00773 ATGACGCAACAAAAAAACCTTTCAGGTGATCAACTTGCCATAGGTAAGGAAACAGGAAGACGTCTCGGGATGGGAACTAACATGTATCCTTCTTCATCACTTCTCGGTGAAAATAAAGATGGATTGGGTGTTGTCGCTGTTGATGATCTCATTGAGAACGCTGATGGTTTTGCTGGAGTCTTTCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGAAAACACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCTGCCCTGAAGATAGCAGACATAGGTATTGCTGTAGCAGATGCTACAGATGCTGCCAGAAGTGCATCTGACATAGTCCTAACAGAACCTGGGTTGAGTGTAATCATAAGCGCAATATATGCTATATCTATCACTATTCGTATTGTGCTTGGTTTCATGTTACTAAACAGCTTTTGGAAATTTGACTTTCCTCCCTTTATGGTTCTTGTCATTGCCATTCTCAATGACGGAACCATCATGACAATATCTAAAGATAGGGTTAAGCCCTCTCCAATTCCTGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGATTGTTCTTGGCAGCTATCTGGCTCTAATGACTGTGATCTTCTTCTATATAGTTGTTGAAACAGACTTCTTTCCTAACCATTTTGGTGTGAGACACTTTCACTATGATCCAAATTCTAACGGTAGTGATCCAACCAAAAGAATGTTGGGATCTGCTGTCTATCTTCAAGTTAGTACCATTTCTCAAGCCTTAATTTTCGTTACACGGTCAAGGGGTTGGTCCTACACAGAAAGGCCTGGTCTTTTGCTTGTGACTGCTTTCATCATTGCTCAAGCGATTGCAACTGTTATATCTGCCACTCTCACTTGGAATGTTGCTGGGATCAAAAGTATCGGTTGGGGCTGGACAGGAGTCATTTGGTTATACAATACTATAACTTATTTAATTCTAGATCCTTTAAAGTTCGCTGTTCGTTATGCACTAAGTGGAAGGGCTTGGAATCTGGTTGTAAACCAAAGGACTGCATTCATCAACAAAAACGACTTTGGTAGAGAAGCTCGTGAGGCTGCATGGGCTACTGAGCAGAGAACCTTACATGGCCTCCACTCTGCTGAGCCAAAAGGGTTTACAGATAAGCACACCTTCAGAGAAATTAATACATTGGCAGAAGAGGCAAGGAGGCGAGCAGAGATTGCAAGGCTCAGAGAGCTTCATACTCTAAAAGGTAGAGTGGAATCATTTGCGAAGCTAAGGGGTTTGAACATAGATGCCATGAACGGACACTACACTGTCTAA 1317 0.4222 MTQQKNLSGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDGLGVVAVDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAIYAISITIRIVLGFMLLNSFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPIPDSWKLSEIFATGIVLGSYLALMTVIFFYIVVETDFFPNHFGVRHFHYDPNSNGSDPTKRMLGSAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVTAFIIAQAIATVISATLTWNVAGIKSIGWGWTGVIWLYNTITYLILDPLKFAVRYALSGRAWNLVVNQRTAFINKNDFGREAREAAWATEQRTLHGLHSAEPKGFTDKHTFREINTLAEEARRRAEIARLRELHTLKGRVESFAKLRGLNIDAMNGHYTV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00773 438 NCBIfam HAD-IC family P-type ATPase 57 129 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00773 438 FunFam Plasma membrane ATPase 2 130 - -
Spst4g00773 438 SUPERFAMILY HAD-like 7 128 IPR036412 -
Spst4g00773 438 PANTHER CALCIUM-TRANSPORTING ATPASE 7 371 - -
Spst4g00773 438 Gene3D - 387 438 - -
Spst4g00773 438 Gene3D - 120 303 - -
Spst4g00773 438 Pfam haloacid dehalogenase-like hydrolase 49 96 - -
Spst4g00773 438 PRINTS H+-transporting ATPase (proton pump) signature 113 138 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00773 438 PRINTS H+-transporting ATPase (proton pump) signature 54 70 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00773 438 PRINTS H+-transporting ATPase (proton pump) signature 82 98 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00773 438 PRINTS H+-transporting ATPase (proton pump) signature 248 269 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00773 438 SUPERFAMILY Calcium ATPase, transmembrane domain M 127 335 IPR023298 -
Spst4g00773 438 Gene3D - 7 119 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00773 Spst-Chr4 34730286 34732486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00773 5 438 Primary Pumps ATPases AT5G62670 69.333 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00773 K01535 - gmx:100794938 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00773 4 34730286 34732486 Spst4g00773 4 34730286 34732486 ECH