Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00772 ATGGGAGAGGGGTCTGTAGAACTTGAGGCTATTATAAAGGAAGCTGTTGATCTGCTTGGAAAATACAATAATCTATCTGCATGGAAGGGTATGCTAGAACAGGAAGGAGATTGCATAGTTTATGCTAGTGAAATAAAGGAAAGAAAGGAGAACATTCCTCTTGAGGAGGTCTTTGATAATCTCAAATGCACAAGAGAAGGTTTAAGCTCTGAGAAAGTACAAGAGAGGCTAGACTTGTTTGGCTACAATAAGCTTGAAGAAAAGAAGGAAAGTAAGATTCTGAAGTTTTTGGGGTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCCATAGGCATGGCACACGGAGGGCATGAAGGAGCAGATTATCAAGATTTTATTGGCATAGTTCTTTTGTTACTTATAAACTCCACCATCAGTTTCATAGAAGAAAACAATGCTGGCAATGCAGCAGCTGCCCTTATGGCTAGATTAGCTCCCAAAGCAAAGGTACTTCGTGATGGAAAATGGAGTGAAGAAGAAGCTTCAGTTTTGGTTCCTGGAGACATAATTAGCATCAAGCTTGGTGACATCATTCCTGCTGATGCACGTCTGCTTGAGGGTGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTTAGCAAACATCCTGGAGAAGGAGTATATTCTGGTTCAACTTGCAAGCAAGGAGAAATTGAGGCAGTAGTTATTGCAACCGGAGTTCACACCTTTTTTGGGAAGGCAGCTCATCTTGTGGAAAACACAACACATGTTGGACATTTTCAGAAGGTTCTAACATCTATTGGGAACTTCTGCATCTGTTCAATTGCTGTTGGTATGGTCATTGAAATCATTGTGATATATGCAATCCATAAAAAGGACTACAGAAATGGTATTGATAACCTCCTTGTGCTATTAATTGGTGGCATCCCTATTGCAATGCCAACTGTCCTTTCTGTCACAATGGCTATTGGTTCACACCGGTTGTCTCAGCAGGGTGCCATAACTAAGAGAATGACTGCCATTGAAGAGATGGCTGGAATGGATGTGTTATGTAGTGACAAGACAGGCACATTAACTCTTAACAAGCTTTCAGTGGACAAGAATATTATTGAGGTTTTTGTTAAAGATGTTGACAATGATATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAGGATGCAATTGATGGTGCTATTGTTTCAATGTTAGCAGACCCAAAGGAGGCACGAGCTGGAATAAAAGAAGTTCACTTTCTTCCATTTAATCCAACTGATAAAAGAACTGCACTTACATACCTTGATGCTGCTGGTAAGATGCACAGGGTTAGCAAAGGTGCTCCAGAGCAGATTCTCAATCTTGCACATAACAGATCAGAAATCCATCAGAAGGTTCATACAATTATTGACAAGTTTGCAGAACGTGGACTTCGTTCTCTTGCAGTTGCCCGCCAGGAAGTACCTGACGGAAATAAAGACAGTCCAGGAGGACCATGGGAGTTTGTTGGGATTCTCCCTCTTTTCGATCCTCCTCGCCATGATAGTGCAGAAACAATTAGAAGAGCTCTTGATCTTGGTGTGAGTGTCAAAATGATCACTGGATTAAAGTGA 1650 0.4164 MGEGSVELEAIIKEAVDLLGKYNNLSAWKGMLEQEGDCIVYASEIKERKENIPLEEVFDNLKCTREGLSSEKVQERLDLFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIGMAHGGHEGADYQDFIGIVLLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEEASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVSKHPGEGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQKVLTSIGNFCICSIAVGMVIEIIVIYAIHKKDYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNIIEVFVKDVDNDMVVLMAARASRLENQDAIDGAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYLDAAGKMHRVSKGAPEQILNLAHNRSEIHQKVHTIIDKFAERGLRSLAVARQEVPDGNKDSPGGPWEFVGILPLFDPPRHDSAETIRRALDLGVSVKMITGLK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00772 549 Gene3D - 127 358 - -
Spst4g00772 549 FunFam Plasma membrane ATPase 165 249 - -
Spst4g00772 549 NCBIfam HAD-IC family P-type ATPase 134 382 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00772 549 Gene3D - 165 249 - -
Spst4g00772 549 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 357 IPR023298 -
Spst4g00772 549 SMART Cation_ATPase_N_a_2 48 120 IPR004014 -
Spst4g00772 549 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 368 527 IPR023299 GO:0000166
Spst4g00772 549 Gene3D - 359 547 IPR023214 -
Spst4g00772 549 NCBIfam plasma-membrane proton-efflux P-type ATPase 67 547 IPR006534 GO:0008553|GO:0016020|GO:0120029
Spst4g00772 549 Gene3D - 374 521 IPR023299 GO:0000166
Spst4g00772 549 Pfam Cation transporter/ATPase, N-terminus 51 114 IPR004014 -
Spst4g00772 549 PRINTS P-type cation-transporting ATPase superfamily signature 538 548 - -
Spst4g00772 549 PRINTS P-type cation-transporting ATPase superfamily signature 516 527 - -
Spst4g00772 549 PRINTS P-type cation-transporting ATPase superfamily signature 362 376 - -
Spst4g00772 549 PRINTS P-type cation-transporting ATPase superfamily signature 212 226 - -
Spst4g00772 549 PANTHER CALCIUM-TRANSPORTING ATPASE 48 547 - -
Spst4g00772 549 FunFam Plasma membrane ATPase 374 521 - -
Spst4g00772 549 ProSitePatterns E1-E2 ATPases phosphorylation site. 364 370 IPR018303 -
Spst4g00772 549 SUPERFAMILY Calcium ATPase, transduction domain A 165 262 IPR008250 -
Spst4g00772 549 Pfam E1-E2 ATPase 163 341 - -
Spst4g00772 549 SUPERFAMILY HAD-like 358 547 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00772 Spst-Chr4 34723195 34727647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00772 50 547 Primary Pumps ATPases AT3G60330 83.133 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00772 K01535 - gmx:100794938 918.687