Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00771 ATGGCCAAAACTAAAGGACGCAAAAACCAGTACACAACAACAGAATCGTTGGTCATATATATACACGTTATACTCCTACGTACAATGATGCCGAGAAAAACCACACTTCAGTTTCAACTTCCAAAAAAACAAAATCAAATGAATTTCAACACCACCTTTGAGTCCGATGATTATGCTCTTCTTGAATCCATTCAACGTTACCTCCTTGACGATAACGAAGACTTGAGTGCTCCCACGGCGGTTTTGCCCACACCCACCGGCGATTCACTTGGGGAGAGTGGTGGTGAATCCACGTCCACCCTTTTCACCAACGCCATCAACTCTCCATTAGCCTTGTCTGGGCAAGCGGCCGCGGCTGCCATCGTAGCGCATGGGGATTCCACGGTTGAGCGTGGTGGTCACGCGCCTCACAGGAGCTACAAGGGAGTGAGGCGTAGACCTTGGGGGAAGTTTGCGGCTGAGATAAGGGATTCGAAGAGAAACGGCGCGAGGGTTTGGCTTGGGACTTTCGACTCGGCTGAGGACGCGGCTTTGGCTTATGACCGAGCCGCTTTTGAAATGCGTGGCTCGAAAGCTAAGCTCAATTTTCCTCATTTAATTGGAAGCAATAATTGA 615 0.4943 MAKTKGRKNQYTTTESLVIYIHVILLRTMMPRKTTLQFQLPKKQNQMNFNTTFESDDYALLESIQRYLLDDNEDLSAPTAVLPTPTGDSLGESGGESTSTLFTNAINSPLALSGQAAAAAIVAHGDSTVERGGHAPHRSYKGVRRRPWGKFAAEIRDSKRNGARVWLGTFDSAEDAALAYDRAAFEMRGSKAKLNFPHLIGSNN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00771 204 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677
Spst4g00771 204 CDD AP2 140 199 IPR001471 GO:0003700|GO:0006355
Spst4g00771 204 Gene3D AP2/ERF domain 139 198 IPR036955 GO:0003700|GO:0006355
Spst4g00771 204 Pfam AP2 domain 140 189 IPR001471 GO:0003700|GO:0006355
Spst4g00771 204 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Spst4g00771 204 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Spst4g00771 204 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Spst4g00771 204 PANTHER DNA-BINDING DOMAIN 115 197 IPR044808 GO:0003700|GO:0009873
Spst4g00771 204 FunFam Ethylene-responsive transcription factor 2 138 198 - -
Spst4g00771 204 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Spst4g00771 204 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00771 Spst-Chr4 34716044 34716658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00771 132 202 AP2-EREBP Transcription Factor Family AT2G44840 77.027 1.56e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst4g00771 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00771 K09286 - gmx:100806359 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00771 4 34716044 34716658 Spst4g00771 4 34716044 34716658 ECH