Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00770 ATGGCCACCACAACATCATGTGATTTCTCATCGTTGGAATCTATTCAGCACTATCTTCTTGATCTTGAACCCGATTCCAACACTCTCACGAACGTTCCCAACCACCAAATTTACTACTCTCCAAGGTACGATCCTTTCCCAAGCCCTACTTTGGAAGGTGTCCATGGTGCAAAGGGTTTGTTGGCCTGCAAAATAGAACACTCCAAAAAGGCGCGTGAGTTTCACGCGCCACCGGTATGGAAGCGGTTCCGAGGCGTGAGACGTAGGCCTTGGGGGAAGTTCGCGGCGGAGATAAGAGATCCAAAGAAGAATGGTGCGAGAATTTGGCTTGGAACTTATGAAACCGAAGAAGAAGCTGGTTTAGCTTATGATAAAGCTGCGTTTAAGATGCGTGGAAGTAAAGCTAAACTGAATTTTCCTCATCTTATAGACTCTTATGTGTCTCTGAAGCCCGTTCGAATCACGAAAGTTTCAAAACAAAACTCGTTGGAACCTTATTCATCATTCTCACCAGAGGCAGAAGGGTCAAAGAAGAAGAAAAACTTGGTTGAGTTGTTGAATAGATTGGCCAAGAGTAGAAGACAAGTGCATGTGTTTGAAACAAGTTTGCATACAAATGATATCAATGTTCATCAATAG 639 0.4366 MATTTSCDFSSLESIQHYLLDLEPDSNTLTNVPNHQIYYSPRYDPFPSPTLEGVHGAKGLLACKIEHSKKAREFHAPPVWKRFRGVRRRPWGKFAAEIRDPKKNGARIWLGTYETEEEAGLAYDKAAFKMRGSKAKLNFPHLIDSYVSLKPVRITKVSKQNSLEPYSSFSPEAEGSKKKKNLVELLNRLAKSRRQVHVFETSLHTNDINVHQ 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00770 212 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Spst4g00770 212 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Spst4g00770 212 FunFam Ethylene-responsive transcription factor 2 81 141 - -
Spst4g00770 212 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Spst4g00770 212 CDD AP2 81 142 IPR001471 GO:0003700|GO:0006355
Spst4g00770 212 PANTHER DNA-BINDING DOMAIN 73 180 IPR044808 GO:0003700|GO:0009873
Spst4g00770 212 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Spst4g00770 212 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Spst4g00770 212 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Spst4g00770 212 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00770 Spst-Chr4 34710517 34711155 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00770 70 154 AP2-EREBP Transcription Factor Family AT2G44840 72.093 7.77e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g00770 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00770 K09286 - gmx:100527194 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00770 4 34710517 34711155 Spst4g00770 4 34710517 34711155 ECH
Spst4g00770 4 34710517 34711155 Spst1g01266 1 15234014 15234652 PCT