Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00768 ATGGCTAATGATTTGTCTTCAGGTGTTCAATCATACGAGTTTGAACTTGATCACCATGTTTTGGTGAATGTTTCCGACCAGGAAACCTTTTTTTCCTCCTCGTACGAGGATCCTACTGCAAACCCTAGCCATGTCCATGACATGACTCAATTGTTTGCATGCAAAATAGAAGCCCCTGTGGCCGCGCGTGAGGTGCACGCGCCTCCGACTTGGAAGCACTTCCGGGGCGTGAGGCGGCGGCCATGGGGGAAGTTCGCAGCGGAGATATGGGATTCGAAGAAGAAGCATGGAAGGGTTTGGCTCGGAACATATGAGACTGAAGAAGAAGCAGGGTTGGCTTATGATAGAGCTGCTTTCAAGATGAGAGGTTGCAAGGCAAAGTTGAATTTTCCACACCTGATTGGATCCCACGCGCCGCCGGAGAGAGCAAGAGTGGCGGCGGAGGCGGCTCTGAAGCGGAACTCCCCGGAGGCTTGTCTGCCACATTTGCGTGCGGCGGAGGATGGTTCACAGGCACAAGGGTCAAAGAAGAGGAGGAACCTAGCTGATTTGCTTAATAGGTTAGCCAAGAATAGAAGCCAAAAATATGTTATTATGAAATAA 603 0.5058 MANDLSSGVQSYEFELDHHVLVNVSDQETFFSSSYEDPTANPSHVHDMTQLFACKIEAPVAAREVHAPPTWKHFRGVRRRPWGKFAAEIWDSKKKHGRVWLGTYETEEEAGLAYDRAAFKMRGCKAKLNFPHLIGSHAPPERARVAAEAALKRNSPEACLPHLRAAEDGSQAQGSKKRRNLADLLNRLAKNRSQKYVIMK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00768 200 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Spst4g00768 200 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
Spst4g00768 200 FunFam Ethylene-responsive transcription factor 2 72 132 - -
Spst4g00768 200 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Spst4g00768 200 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Spst4g00768 200 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Spst4g00768 200 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Spst4g00768 200 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Spst4g00768 200 PANTHER DNA-BINDING DOMAIN 50 170 IPR044808 GO:0003700|GO:0009873
Spst4g00768 200 CDD AP2 72 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00768 Spst-Chr4 34704888 34705490 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00768 73 136 AP2-EREBP Transcription Factor Family AT2G44840 78.125 1.40e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g00768 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00768 K09286 - gmx:100792115 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00768 4 34704888 34705490 Spst4g00768 4 34704888 34705490 ECH
Spst4g00768 4 34704888 34705490 Spst1g01265 1 15231153 15231770 PCT