Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00766 ATGAACCCACATGCTTCAAACACCAACGTGAATGCCTTAGACCTCTCTGAGATATCTGCAACGACGTCGTTTCAGGATGCCTCCCCGTCATGCTTCCGGAGCATTTTGTTGGCGGAGAACTCGGAGGAGCTTCCGTTGAAAGAGGATGACGCCGACGACATGGTTATCTACGGTGCTTTGTGTGAGGCGGCCGCCGCCACCACCGGATTGTTCCCCGCCACTGGAAACGGGGTGAGCAACGTGGCTTTGAAAGTAGAAAATGAGGGTCAAACTGGTATCACTAAAGCCGCGGGTAGTACTGACGCGCCTCCAATGAGAGGGCTGAGCTACCGCGGTGTACGGAGGAGGCCGTGGGGGAAGTACGCGGCGGAGATAAGAGACGGTAAGAGAAATGGTGTGAGAGTGTGGCTTGGAACCTACGAAACTGCAGAAGATGCAGCTTTGGCTTATGATCGAGCAGCGTTTAAAATGCATGGCTCGAAAGCAAAGCTGAATTTTCCTCATTTAATTGGTTCCAATGATACCGAGCCAAGTAGGGTTACGTTAAAGAAACGCTCTTTTGATGTTTTCTCATCATCGAATGTGTCATCGTCATCAATGGCTGCAAAGCGGAATTATAGATGGGGTGAGTCAAATCGAGTTGGATCAACCATTCTCAAATCTGGATTCAAATCTGTATTCAAACAACTCTCGTTGTCCTCAACAAGGGAACAGTCAAACCAATTGAAGGATGCTTCCGCCGCGAACTTCAGTTTCTCGAGCATTTTCGCAGCGGAGAATTGGGCTGAGCTGCCGTTGAAGGAGGACAACACCGACGACATGGCAATGTATGCCGTTTTGCGTGAGGCCGCGGCCACCGGATGGTTCCCCTCTAATGGCAATGAGGTGAGCAACGTTGGTGTAGCCGTGAAAATGGAAAATGAGAGGGTTGAGCTACCGCGGTGTGCCGAGGAGGCCGTGGGAAAGTACGCGTCGGAGATAAGAGATGGTAAAAGAAGTGGTGAGAGAGTGTGGCTCAGAACCAATGCAACTGCTGAAGATAGCTTTGGCTTATGA 1056 0.5066 MNPHASNTNVNALDLSEISATTSFQDASPSCFRSILLAENSEELPLKEDDADDMVIYGALCEAAAATTGLFPATGNGVSNVALKVENEGQTGITKAAGSTDAPPMRGLSYRGVRRRPWGKYAAEIRDGKRNGVRVWLGTYETAEDAALAYDRAAFKMHGSKAKLNFPHLIGSNDTEPSRVTLKKRSFDVFSSSNVSSSSMAAKRNYRWGESNRVGSTILKSGFKSVFKQLSLSSTREQSNQLKDASAANFSFSSIFAAENWAELPLKEDNTDDMAMYAVLREAAATGWFPSNGNEVSNVGVAVKMENERVELPRCAEEAVGKYASEIRDGKRSGERVWLRTNATAEDSFGL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00766 351 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Spst4g00766 351 CDD AP2 110 169 IPR001471 GO:0003700|GO:0006355
Spst4g00766 351 FunFam Ethylene-responsive transcription factor 2 109 168 - -
Spst4g00766 351 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Spst4g00766 351 PANTHER DNA-BINDING DOMAIN 320 347 IPR044808 GO:0003700|GO:0009873
Spst4g00766 351 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Spst4g00766 351 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Spst4g00766 351 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700|GO:0006355
Spst4g00766 351 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Spst4g00766 351 SMART rav1_2 109 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00766 Spst-Chr4 34623784 34631758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00766 249 348 AP2-EREBP Transcription Factor Family AT2G44840 39.286 3.13e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst4g00766 AP2 8.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00766 K09286 - gmx:100793366 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00766 4 34623784 34631758 Spst4g00766 4 34623784 34631758 ECH