Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00732 ATGAACGATCTTCTAACGGAATCATTTGAAATCCCACGTGGCCACAACAGAGGTGCTGACATTGAGTTAGGAGAATATGCGAGGAATTCAGGAGAATTGGGCTTGGATACTTTCTTCAAAAAGGTTCAAGAACTTGATAAGCAATATGCTAAGCTGGATAAGCTTTTGAAAATGCTTGAGGATTCCCATGAAGAAACCAAAGTTGTTACTAAGGCTCCTTCCATGAAGGCTATAAAGGAGAAAATGGAGAAAGATGTCGAGGAAGTTAAGAAAACTGCATATTACATAAAGACCAGAATTGAAGAATTGGAGAAAGAGAATTTGGCAAACAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGGTGTTGACCGCTCAAGAACAGCAACAACCATTTCTTTAAAAAAAAAACTGAAAGATAAAATGGCAGAATTTCAGACCCTGAGAGAGGTCATCCATCAAGAGTATCGTGAGGTTGTTGAGAGACGTGTTTTTACAGTTACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCAATTCAGGAACAAGGAAGAGGCCAGATAGTGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGATGTTGAAAAGAAGCTTCTTGATCTGCAGCAGATATTTCTGGATATTGCAGTGTTAGTGGATGCGCAAGGAGACATGCTTAACAACATAGAAAATCAGGTTTCAAGTGCAGTGGATCACGTGCAGCAGGGCAACAATGCCCTCTTGCAGGCAAAGAAACATCAAAAGAGCTCTAGAAAATGGATGTGCGTTGCAATCATGATACTTCTCATCTTTGTTATAATCACCGTTGTCAGTGTCATCAAACCATGGATTCGCAAAAATGGTGCATAA 921 0.4072 MNDLLTESFEIPRGHNRGADIELGEYARNSGELGLDTFFKKVQELDKQYAKLDKLLKMLEDSHEETKVVTKAPSMKAIKEKMEKDVEEVKKTAYYIKTRIEELEKENLANRQKPGCGKGSGVDRSRTATTISLKKKLKDKMAEFQTLREVIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIVDTLAEIQERHEAVRDVEKKLLDLQQIFLDIAVLVDAQGDMLNNIENQVSSAVDHVQQGNNALLQAKKHQKSSRKWMCVAIMILLIFVIITVVSVIKPWIRKNGA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00732 306 CDD SynN 35 192 IPR006011 GO:0016020
Spst4g00732 306 SMART tSNARE_6 200 267 IPR000727 -
Spst4g00732 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Spst4g00732 306 PANTHER SYNTAXIN 38 286 IPR045242 -
Spst4g00732 306 Pfam SNARE domain 241 293 IPR000727 -
Spst4g00732 306 FunFam Syntaxin 132 198 298 - -
Spst4g00732 306 Gene3D - 198 298 - -
Spst4g00732 306 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst4g00732 306 SUPERFAMILY t-snare proteins 34 260 IPR010989 GO:0016020|GO:0016192
Spst4g00732 306 CDD SNARE_syntaxin1-like 204 266 - -
Spst4g00732 306 Pfam Syntaxin 38 240 IPR006011 GO:0016020
Spst4g00732 306 Gene3D - 35 163 - -
Spst4g00732 306 SMART SynN_4 30 156 IPR006011 GO:0016020
Spst4g00732 306 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00732 Spst-Chr4 30963345 30978415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00732 1 306 SNARE and Associated Proteins AT3G03800 73.203 3.53e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00732 K08486 - gmx:100306329 526.168